genome.fa.s9334.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009334.1 Kokia drynarioides strain JFW-HI SEQ_124041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  289732

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336--486	62	2.4	61	79	7	178	43	3	7	45	1.49
347--488	31	4.7	30	67	16	78	43	3	7	45	1.50
487--776	144	2.0	144	97	0	544	37	13	8	39	1.76
524--821	144	2.1	144	85	3	404	40	13	7	38	1.74
2620--2855	121	1.9	123	86	1	332	41	8	13	37	1.74
7652--7745	9	10.6	9	72	15	63	30	4	1	63	1.20
7652--7774	10	12.1	10	69	22	53	31	4	0	62	1.22
7693--7758	26	2.6	26	80	2	71	28	4	0	66	1.11
8211--8280	33	2.1	33	83	0	86	37	4	7	51	1.49
10094--10123	16	1.9	15	93	6	51	70	0	0	30	0.88
10093--10174	9	9.0	9	71	12	51	56	1	0	42	1.07
33910--34126	107	2.0	108	92	0	364	35	17	11	36	1.85
42568--42631	11	5.7	11	78	8	67	37	0	1	60	1.06
42568--42631	6	11.6	5	78	15	56	37	0	1	60	1.06
42567--42628	23	2.7	23	82	9	83	38	0	1	59	1.07
42571--42627	17	3.4	17	88	7	89	40	0	1	57	1.09
43333--43367	3	11.7	3	100	0	70	65	0	0	34	0.93
43366--43394	3	9.7	3	100	0	58	34	0	0	65	0.93
43644--43686	17	2.5	17	81	11	52	34	11	11	41	1.78
44467--44643	59	3.0	60	80	6	191	31	30	7	30	1.85
44461--44646	30	6.2	30	76	9	182	32	30	6	30	1.84
45665--45713	19	2.4	21	73	13	57	48	4	20	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48704--48792	38	2.3	38	83	9	101	47	20	3	29	1.66
48741--48787	25	1.9	24	83	12	60	48	14	4	31	1.63
50489--50527	12	3.3	12	85	7	62	28	0	0	71	0.86
50482--50527	23	2.0	23	100	0	92	26	0	0	73	0.83
50483--50553	28	2.5	28	78	17	74	29	1	0	69	0.98
50507--50587	40	2.0	41	81	11	96	34	3	0	61	1.14
52311--52337	14	1.9	14	100	0	54	66	0	11	22	1.22
55709--55741	2	17.0	2	93	6	59	48	0	0	51	1.00
58403--58630	115	2.0	113	97	1	429	23	7	29	39	1.82
65519--65759	125	1.9	125	90	1	385	35	14	17	32	1.91
80242--80276	2	17.5	2	100	0	70	51	0	48	0	1.00
80943--80993	17	2.8	17	85	8	57	45	1	0	52	1.12
89068--89109	22	2.0	21	85	4	57	21	16	14	47	1.82
89198--89247	21	2.4	21	80	12	59	40	0	2	58	1.10
89207--89258	18	2.7	19	85	11	63	42	0	1	55	1.10
95013--95059	11	4.5	11	76	17	55	42	0	0	57	0.98
95020--95058	19	2.1	19	95	0	69	41	0	0	58	0.98
95001--95071	31	2.4	29	82	13	92	47	0	0	52	1.00
102271--102319	18	2.6	19	81	15	57	36	20	4	38	1.72
104377--104417	21	2.0	21	85	4	57	31	7	0	60	1.24
104387--104427	21	2.0	21	85	0	55	36	4	0	58	1.20
106752--106825	34	2.2	34	85	2	96	39	0	4	56	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110265--110308	22	2.1	22	83	8	56	54	4	11	29	1.56
118970--119000	3	10.3	3	100	0	62	64	0	0	35	0.94
120768--120874	55	1.9	56	86	1	153	26	9	14	50	1.72
120836--120888	21	2.5	21	90	0	88	30	9	13	47	1.74
121424--121466	20	2.2	20	86	0	59	60	6	2	30	1.35
122899--122948	2	25.0	2	100	0	100	50	0	0	50	1.00
125818--125928	54	2.1	54	91	0	177	40	29	10	18	1.85
127212--127268	28	2.0	29	86	3	80	64	3	7	24	1.34
127212--127273	29	2.2	29	82	5	74	64	4	8	22	1.40
129374--129447	15	4.9	15	77	0	58	10	58	9	21	1.60
135655--135693	16	2.4	16	91	0	60	53	17	7	20	1.68
136888--136917	14	2.1	14	93	0	51	60	6	33	0	1.23
147146--147174	6	4.8	6	100	0	58	17	0	0	82	0.66
149792--149843	3	17.3	3	100	0	104	32	0	0	67	0.91
157399--157497	27	3.7	27	81	0	117	22	23	23	31	1.99
158959--158996	15	2.5	15	91	0	58	21	0	57	21	1.40
158968--159000	5	6.6	5	100	0	66	21	0	60	18	1.36
158995--159054	30	2.0	30	87	12	88	41	0	38	20	1.52
167461--167495	3	11.7	3	87	0	52	34	34	28	2	1.72
170227--170300	37	2.0	38	91	2	123	44	2	6	45	1.44
173768--173812	22	2.0	23	91	4	74	40	0	2	57	1.11
173780--173831	27	2.0	26	84	3	68	42	3	0	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179002--179039	20	1.9	19	89	5	58	44	7	0	47	1.32
187175--187221	21	2.2	21	92	0	76	27	17	17	38	1.91
187183--187223	21	2.0	21	100	0	82	24	17	19	39	1.92
194815--194862	3	16.3	3	91	4	80	31	2	0	66	1.03
214567--214686	59	2.0	59	100	0	240	45	12	11	30	1.77
233881--233906	12	2.2	12	100	0	52	7	34	23	34	1.83
236952--237008	25	2.4	23	78	18	55	52	1	1	43	1.21
238964--239002	2	19.5	2	100	0	78	51	48	0	0	1.00
241531--241672	23	6.1	23	79	12	155	11	25	23	40	1.87
241538--241703	71	2.4	71	80	13	191	12	25	21	40	1.89
241536--241703	48	3.6	47	76	16	152	13	25	21	40	1.89
246676--246704	2	14.5	2	100	0	58	51	0	0	48	1.00
256570--256612	18	2.4	18	88	7	61	53	0	0	46	1.00
260643--260686	12	3.5	13	82	17	58	38	0	2	59	1.10
263271--263312	15	2.5	17	77	18	52	35	0	0	64	0.94
266289--266327	21	1.9	21	89	5	62	28	5	2	64	1.28
267628--267848	31	7.2	31	75	4	178	26	13	37	22	1.92
267610--267904	31	9.6	31	73	5	114	26	14	34	23	1.94
267606--267903	62	4.8	62	76	4	271	26	14	35	23	1.93
268303--268588	143	2.0	143	94	0	500	39	16	10	34	1.82
271966--272016	20	2.6	19	93	3	75	23	0	5	70	1.09
271973--272016	20	2.2	20	100	0	88	25	0	4	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271957--272013	25	2.4	25	80	11	66	26	0	5	68	1.11
276917--276945	6	4.8	6	100	0	58	17	34	17	31	1.93
280792--280834	21	2.0	22	86	9	61	69	0	4	25	1.07
282013--282052	15	2.5	17	80	11	50	30	2	5	62	1.29
281976--282051	13	5.6	13	69	22	50	28	1	5	64	1.23
282250--282275	2	13.0	2	100	0	52	50	0	0	50	1.00
285285--285315	14	2.1	15	94	5	55	22	0	0	77	0.77
285289--285327	14	2.8	14	84	0	51	33	0	0	66	0.92

Tables:   1

The End!