Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009337.1 Kokia drynarioides strain JFW-HI SEQ_124044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3048
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.42


Found at i:785 original size:58 final size:58

Alignment explanation


    Indices: 709--828  Score: 161
    Period size: 58  Copynumber: 2.1  Consensus size: 58

        699 ATCCATCAAC

                    *                                  *        *      
        709 AAACTAAATCCAAATATTTTTAAACCCAAATATAATTTCATTCTTCAAA-AATACTCAT
          1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCT-AAATAACACTCAT

                         *           *       *    *                   
        767 AAACTAAACCCAACTATTTTTAAACTCAAATATCATTTTATTCCTAAATAACACTCAT
          1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTCAT

                
        825 AAAC
          1 AAAC

        829 AACTCTTTTT


Statistics
Matches: 54,  Mismatches: 7, Indels: 2
        0.86            0.11        0.03

Matches are distributed among these distances:
  57    3  0.06
  58   51  0.94

ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33


Consensus pattern (58 bp):   
AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTCAT
Done.