Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009344.1 Kokia drynarioides strain JFW-HI SEQ_124051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1470
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33


Found at i:940 original size:16 final size:16

Alignment explanation


    Indices: 919--959  Score: 82
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        909 GCTTATATCC

                            
        919 TATTATATTATATATT
          1 TATTATATTATATATT

                            
        935 TATTATATTATATATT
          1 TATTATATTATATATT

                     
        951 TATTATATT
          1 TATTATATT

        960 TATGCATCAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   25  1.00

ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63


Consensus pattern (16 bp):   
TATTATATTATATATT

Found at i:943 original size:9 final size:9

Alignment explanation


    Indices: 919--962  Score: 60
    Period size: 9  Copynumber: 5.3  Consensus size: 9

        909 GCTTATATCC

                     
        919 TATTATA-T
          1 TATTATATT

                     
        927 TA-TATATT
          1 TATTATATT

                     
        935 TATTATA-T
          1 TATTATATT

                     
        943 TA-TATATT
          1 TATTATATT

                     
        951 TATTATATT
          1 TATTATATT

               
        960 TAT
          1 TAT

        963 GCATCATAAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 7
        0.82            0.00        0.18

Matches are distributed among these distances:
   7    8  0.25
   8   11  0.34
   9   13  0.41

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (9 bp):   
TATTATATT
Done.