Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009348.1 Kokia drynarioides strain JFW-HI SEQ_124055, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2743
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.33

Warning! 181 characters in sequence are not A, C, G, or T


Found at i:162 original size:26 final size:26

Alignment explanation


    Indices: 112--181  Score: 106
    Period size: 26  Copynumber: 2.7  Consensus size: 26

        102 CGAAGTACTA

                                      
        112 AACAGAGAGCACAT-AAGTGCTGGGC
          1 AACAGAGAGCACATAAAGTGCTGGGC

                                      
        137 AACAGAGAGCACATAAAGTGCTGGGC
          1 AACAGAGAGCACATAAAGTGCTGGGC

                *    *   *     
        163 AACAAAGAGTACACAAAGT
          1 AACAGAGAGCACATAAAGT

        182 ACTGAGCACA


Statistics
Matches: 41,  Mismatches: 3, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  25   14  0.34
  26   27  0.66

ACGTcount: A:0.43, C:0.19, G:0.27, T:0.11


Consensus pattern (26 bp):   
AACAGAGAGCACATAAAGTGCTGGGC

Found at i:215 original size:23 final size:23

Alignment explanation


    Indices: 185--257  Score: 137
    Period size: 23  Copynumber: 3.2  Consensus size: 23

        175 ACAAAGTACT

                     *             
        185 GAGCACACAAAGTGCTAATCAGA
          1 GAGCACACACAGTGCTAATCAGA

                                   
        208 GAGCACACACAGTGCTAATCAGA
          1 GAGCACACACAGTGCTAATCAGA

                                   
        231 GAGCACACACAGTGCTAATCAGA
          1 GAGCACACACAGTGCTAATCAGA

                
        254 GAGC
          1 GAGC

        258 GTGCTAGTGT


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  23   49  1.00

ACGTcount: A:0.40, C:0.25, G:0.23, T:0.12


Consensus pattern (23 bp):   
GAGCACACACAGTGCTAATCAGA
Done.