Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009354.1 Kokia drynarioides strain JFW-HI SEQ_124061, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6743
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35


Found at i:2624 original size:23 final size:22

Alignment explanation


    Indices: 2598--2642  Score: 54
    Period size: 23  Copynumber: 2.0  Consensus size: 22

       2588 ATATTTTAGA

                 *                 
       2598 TTATTTTATTTAATTAAATTATT
          1 TTATTGTATTTAA-TAAATTATT

                   *       *      
       2621 TTATTGTCTTTAATATATTATT
          1 TTATTGTATTTAATAAATTATT

       2643 AACCCTAAAC


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  22    8  0.42
  23   11  0.58

ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64


Consensus pattern (22 bp):   
TTATTGTATTTAATAAATTATT
Done.