genome.fa.s9361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009361.1 Kokia drynarioides strain JFW-HI SEQ_124068, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70440

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12496--12592	29	3.4	29	84	2	115	31	9	25	32	1.88
12498--12564	28	2.4	28	84	2	80	29	11	25	32	1.92
12516--12615	29	3.5	29	82	9	107	33	8	26	33	1.85
12619--12826	59	3.5	58	76	9	172	36	2	23	37	1.70
12573--12877	88	3.5	87	79	8	230	36	3	22	37	1.71
12655--12877	29	7.6	29	82	6	245	35	1	23	39	1.65
12656--12877	59	3.8	58	81	4	250	36	1	22	39	1.65
14761--14870	17	6.4	17	78	5	123	54	3	1	40	1.28
14761--14842	6	14.2	6	70	12	55	53	2	2	41	1.27
14761--14825	29	2.2	29	75	5	69	52	1	3	43	1.26
15602--16287	39	17.8	38	70	16	308	24	19	30	25	1.98
15579--16168	77	7.6	77	81	4	582	24	18	30	25	1.98
15579--16129	155	3.6	154	83	1	656	24	18	30	26	1.98
24393--24513	58	2.1	58	83	6	147	33	7	23	35	1.83
24393--24513	29	4.2	29	76	10	104	33	7	23	35	1.83
24471--24787	88	3.6	88	75	6	266	36	3	24	35	1.74
24559--24837	29	9.5	29	78	8	269	34	3	24	37	1.72
24558--24837	88	3.2	89	79	8	322	34	3	24	37	1.73
24556--24846	59	4.9	59	86	3	381	35	3	24	36	1.74
24466--24856	29	13.3	29	71	11	219	36	3	24	34	1.74
24968--25006	21	1.9	20	84	5	51	35	20	5	38	1.75
25493--25560	33	2.1	33	94	0	118	27	2	20	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27191--27694	39	12.9	39	72	8	310	23	29	20	26	1.99
27171--27645	78	6.1	78	85	1	587	23	29	21	25	1.99
28260--28298	21	1.9	20	84	5	51	35	20	5	38	1.75
28632--28684	25	2.1	26	96	3	99	7	22	16	52	1.69
32886--32928	16	2.7	15	86	10	59	65	0	2	32	1.06
33622--33657	17	2.1	17	94	0	63	11	36	16	36	1.84
33943--33967	11	2.3	11	100	0	50	24	0	8	68	1.16
34049--34218	29	5.8	29	74	8	123	35	26	4	34	1.76
34050--34410	30	12.4	28	73	13	189	34	28	3	33	1.76
34114--34412	113	2.6	114	79	6	307	34	28	4	32	1.76
34088--34397	30	10.6	30	73	14	197	34	28	3	33	1.74
34460--34522	30	2.1	30	85	5	83	31	20	4	42	1.73
45533--46193	39	17.2	37	72	15	360	24	32	19	24	1.98
45530--46287	78	9.8	78	78	5	660	24	31	19	24	1.98
46081--46224	39	3.7	39	83	5	159	22	33	20	23	1.97
46765--46828	17	3.7	17	87	2	83	39	0	4	56	1.20
47445--47520	20	3.9	19	80	15	84	65	0	2	31	1.06
47485--47512	3	9.3	3	100	0	56	67	0	0	32	0.91
47445--47515	12	5.8	12	77	19	67	66	0	1	32	1.01
48635--48900	30	9.0	30	77	8	210	32	24	4	38	1.76
48632--48901	88	3.0	90	82	5	316	31	25	4	38	1.76
48696--48900	59	3.5	59	82	5	245	32	24	3	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50879--50998	33	3.7	33	73	6	138	40	16	11	30	1.84
57318--57800	59	8.3	56	74	10	239	39	4	24	32	1.74
57318--57406	29	3.0	29	67	12	74	38	3	29	29	1.73
57321--57421	29	3.4	28	69	16	71	40	3	25	29	1.74
57553--57844	29	10.0	29	71	11	211	39	2	22	35	1.67
57362--57800	58	7.6	57	75	9	327	38	4	24	33	1.74
57490--57830	117	2.9	114	79	8	323	39	3	22	34	1.70
57553--57844	58	5.0	59	81	4	281	39	2	22	35	1.67
59631--59678	25	1.9	25	87	8	71	12	6	16	64	1.46
59704--59790	6	15.3	6	66	20	53	56	2	3	37	1.29
59709--59759	26	1.9	27	88	4	77	56	3	1	37	1.29
60094--60365	50	5.4	50	66	16	148	30	19	16	33	1.94
60080--60945	102	8.5	102	92	1	1423	30	18	15	35	1.92
60698--60945	51	4.9	51	66	13	152	30	17	15	35	1.92
61092--61280	100	1.9	102	83	2	247	16	25	19	39	1.92
66043--66085	18	2.3	19	80	4	52	4	34	2	58	1.32

Tables:   1

The End!