genome.fa.s9362.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009362.1 Kokia drynarioides strain JFW-HI SEQ_124069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68342

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11999--12079	42	1.9	42	92	0	135	24	22	25	27	2.00
13329--13376	21	2.3	21	75	3	53	41	31	2	25	1.67
13867--13914	21	2.3	21	75	3	53	41	31	2	25	1.67
12903--13979	538	2.0	538	99	0	2136	33	12	14	38	1.85
14135--14446	155	2.0	154	91	1	500	41	11	8	38	1.71
14417--14469	22	2.3	25	81	18	71	56	3	1	37	1.28
14697--14735	19	2.1	19	85	9	53	69	0	0	30	0.89
16203--16247	17	2.6	17	89	3	63	37	4	2	55	1.32
16217--16314	6	16.7	6	74	14	80	44	4	2	48	1.33
16221--16264	11	3.9	11	88	5	70	40	4	0	54	1.21
16238--16285	17	2.8	17	90	3	69	39	2	4	54	1.32
16217--16269	23	2.3	23	100	0	106	43	3	0	52	1.19
18106--18281	59	3.0	58	87	5	237	35	26	3	34	1.73
18110--18281	29	5.8	29	78	4	166	36	25	3	34	1.73
18111--18422	59	5.4	56	79	9	233	34	25	4	34	1.77
18141--18309	29	5.8	27	77	12	99	36	24	3	36	1.73
18323--18518	30	6.8	29	64	17	102	33	23	6	35	1.81
23776--23824	18	2.7	18	75	12	55	61	2	10	26	1.39
23794--23858	22	2.6	24	76	18	71	69	1	4	24	1.16
23991--24056	33	2.1	31	86	11	89	75	3	3	18	1.06
24079--24131	22	2.5	21	82	11	72	77	5	0	16	0.96
24112--24170	19	3.2	17	73	15	55	69	5	1	23	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24191--24246	25	2.2	25	81	9	69	62	5	7	25	1.42
26243--26290	22	2.2	21	82	14	62	39	4	25	31	1.74
28281--28346	33	2.0	33	100	0	132	30	12	15	42	1.83
37950--37980	3	10.3	3	100	0	62	32	0	0	67	0.91
54049--54267	29	7.4	29	78	2	177	35	24	4	35	1.75
54009--54260	59	4.3	59	78	4	215	37	24	3	34	1.73
54049--54260	88	2.4	88	82	8	243	36	25	3	34	1.74
54010--54296	29	9.8	28	74	10	173	35	25	3	35	1.74
54165--54330	58	2.8	58	73	7	156	33	24	6	36	1.80
54137--54355	59	3.7	58	73	8	167	34	23	5	37	1.77
54353--54412	28	2.2	27	85	8	77	26	20	5	48	1.70
67174--67298	58	2.2	58	82	5	155	39	16	15	29	1.89
68212--68248	9	4.3	9	83	10	51	54	0	45	0	1.00

Tables:   1

The End!