genome.fa.s9363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009363.1 Kokia drynarioides strain JFW-HI SEQ_124070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93361

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4542--4603	28	2.2	28	85	2	81	32	11	25	30	1.91
4587--4736	59	2.6	59	73	13	150	38	8	23	30	1.83
4556--4880	28	11.2	28	67	18	143	36	6	26	31	1.82
4677--5059	29	13.2	28	72	13	224	37	3	26	32	1.74
6160--6201	3	14.0	3	100	0	84	33	0	0	66	0.92
6162--6224	21	2.9	22	86	6	67	39	0	0	60	0.97
6853--6934	34	2.4	34	77	6	85	50	4	2	42	1.37
6853--6934	17	4.8	17	76	1	74	50	4	2	42	1.37
15280--15327	22	2.2	21	79	13	53	45	0	0	54	0.99
16095--16180	30	2.6	32	84	12	104	53	2	0	44	1.13
16104--16179	31	2.4	34	82	10	97	56	2	0	40	1.13
16638--16666	12	2.5	12	94	5	51	24	0	0	75	0.80
18956--18997	21	2.0	21	100	0	84	28	28	19	23	1.98
19772--19823	24	2.2	24	89	0	77	36	1	5	55	1.35
22427--22462	18	1.9	19	88	5	56	30	2	0	66	1.06
23506--23571	30	2.2	31	86	8	91	36	7	9	46	1.64
32050--32254	81	2.5	81	88	0	302	20	20	25	33	1.97
32311--32443	67	2.0	67	85	2	178	21	18	28	30	1.97
32509--32542	2	17.0	2	93	0	59	50	2	0	47	1.16
32643--32689	24	2.0	24	95	0	85	57	2	4	36	1.30
34432--34778	29	12.0	29	77	9	212	35	25	4	34	1.75
34472--34779	30	10.6	29	73	14	100	36	25	3	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42987--43180	97	2.0	97	98	0	379	37	14	19	28	1.92
47009--47482	209	2.3	208	90	1	727	36	18	22	21	1.95
47780--47876	6	16.8	6	72	12	78	42	1	3	53	1.23
47779--47857	17	4.6	17	87	6	115	40	0	3	55	1.18
47784--47877	11	8.3	11	70	9	55	42	1	3	53	1.24
49617--50004	30	13.2	30	76	12	182	37	25	2	35	1.71
49722--50063	29	11.7	29	79	10	261	36	26	3	33	1.74
49655--49945	88	3.3	86	80	11	286	37	25	2	34	1.68
49643--49945	59	5.1	57	80	9	245	36	25	2	35	1.69
49862--50058	59	3.4	59	79	6	197	37	23	3	35	1.71
56884--56940	23	2.5	24	91	5	91	57	22	3	15	1.53
64080--64253	87	2.0	87	100	0	348	32	28	11	27	1.91
64950--65014	30	2.1	30	86	8	87	49	3	3	44	1.33
65196--65222	10	2.7	10	100	0	54	51	0	0	48	1.00
68215--68242	5	5.6	5	100	0	56	39	21	0	39	1.54
74808--74836	14	2.1	14	100	0	58	41	6	13	37	1.72
82641--82847	54	3.9	54	74	2	148	30	22	8	38	1.84
82641--82847	107	1.9	107	80	3	238	30	22	8	38	1.84
83475--83593	31	3.9	31	73	7	100	31	35	10	23	1.88
83577--83734	62	2.5	62	77	4	140	25	36	16	22	1.94
83637--83734	31	3.2	31	77	0	97	26	34	18	20	1.95
85516--85550	17	2.1	17	100	0	70	45	17	5	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86319--86353	19	1.9	18	88	11	54	65	0	28	5	1.15
91705--91748	22	2.0	22	100	0	88	36	18	27	18	1.94

Tables:   1

The End!