Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009369.1 Kokia drynarioides strain JFW-HI SEQ_124076, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6377
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.39

Warning! 6 characters in sequence are not A, C, G, or T


Found at i:2961 original size:17 final size:17

Alignment explanation


    Indices: 2925--2967  Score: 50
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       2915 TCTCTCTTGA

                    *      * 
       2925 TCTTTAACCTTCCATCT
          1 TCTTTAACATTCCATAT

                       *     
       2942 TCTTTAACATTTCATAT
          1 TCTTTAACATTCCATAT

                     
       2959 TCTTATAAC
          1 TCTT-TAAC

       2968 TACTTTTTCC


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  17   18  0.82
  18    4  0.18

ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49


Consensus pattern (17 bp):   
TCTTTAACATTCCATAT
Done.