genome.fa.s9374.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009374.1 Kokia drynarioides strain JFW-HI SEQ_124081, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135424

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--158	47	2.0	47	82	0	112	28	15	11	44	1.81
655--704	17	2.9	17	82	8	57	70	2	2	26	1.09
1216--1269	27	2.0	28	85	3	74	14	0	31	53	1.41
1233--1269	14	2.6	15	83	12	51	10	0	27	62	1.28
1712--1776	21	2.9	23	84	8	73	9	4	20	66	1.38
1790--1849	12	5.1	12	74	11	52	8	6	18	66	1.40
1787--1830	23	1.9	23	95	0	79	11	6	11	70	1.33
2654--2734	22	3.4	22	75	21	74	55	0	0	44	0.99
2624--2734	49	2.2	50	82	6	136	52	0	0	46	1.06
2622--2714	27	3.6	27	78	15	88	51	1	0	47	1.07
3225--3277	15	3.6	14	73	12	52	41	24	9	24	1.84
3208--3277	30	2.3	30	95	4	124	37	27	11	24	1.89
3880--3952	11	6.5	11	73	20	55	63	0	0	36	0.95
3874--3944	12	6.2	12	72	22	55	60	0	0	39	0.97
4972--5166	30	6.6	29	73	12	107	30	25	4	38	1.76
4972--5138	89	1.9	89	88	2	255	31	26	3	38	1.74
5123--5200	28	2.8	30	76	18	87	28	26	10	34	1.89
8111--8184	6	12.7	6	75	11	55	43	0	1	55	1.08
8098--8184	17	5.0	17	79	6	86	42	0	2	55	1.12
8877--8938	15	4.0	16	70	6	56	54	3	1	40	1.26
8951--9012	21	2.9	21	90	2	88	58	1	3	37	1.24
10141--10426	29	9.9	29	68	16	130	31	26	2	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10128--10437	59	5.4	57	82	8	308	32	26	2	39	1.69
10141--10482	29	11.9	29	66	14	82	31	26	3	38	1.72
10363--10490	29	4.5	29	70	14	95	31	25	4	38	1.77
10363--10522	29	5.6	29	70	16	84	30	26	5	36	1.80
17497--17841	50	6.9	50	72	12	251	39	20	25	14	1.90
17497--17975	150	3.2	150	90	1	690	39	18	26	15	1.91
17600--17954	50	7.1	50	74	14	257	39	19	25	15	1.91
17549--18004	50	9.1	49	74	9	206	38	19	26	15	1.91
18055--18533	195	2.5	194	89	0	733	35	18	24	22	1.96
18402--18641	108	2.2	108	93	0	408	36	20	22	20	1.95
18504--18891	201	2.0	194	87	4	562	34	17	24	23	1.96
19146--19254	17	6.2	17	80	7	110	45	0	2	50	1.22
19162--19235	6	12.7	6	73	11	64	44	0	2	52	1.15
19264--19311	23	2.0	24	88	4	71	52	25	4	18	1.63
27849--27884	18	2.0	18	94	0	63	19	11	11	58	1.62
28300--28917	49	12.7	49	72	12	375	39	19	25	15	1.91
28300--28952	147	4.5	147	73	11	434	38	19	25	15	1.92
28300--28939	98	6.6	99	81	5	467	38	20	25	15	1.92
28513--28891	99	3.9	97	81	6	365	39	21	24	14	1.91
29820--29862	3	14.7	3	81	13	54	25	2	2	69	1.12
29912--29986	15	5.4	15	68	28	51	61	0	0	38	0.96
31078--31421	118	2.9	118	92	2	548	31	25	4	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31078--31420	59	5.8	58	85	6	440	31	25	3	39	1.74
32883--32912	13	2.2	14	94	5	53	50	16	0	33	1.46
33023--33388	180	2.0	181	89	2	565	29	21	16	33	1.95
33906--33939	4	8.0	4	87	12	50	47	2	2	47	1.32
37750--37814	31	2.1	31	83	11	80	29	3	4	63	1.30
40364--40403	21	1.9	21	89	0	62	35	17	7	40	1.78
41132--41234	37	2.8	36	83	2	116	35	30	19	14	1.92
41172--41300	58	2.2	58	79	2	143	37	29	17	15	1.90
41230--41313	37	2.3	37	83	6	107	38	29	16	15	1.90
46862--46933	28	2.6	29	80	12	71	26	0	6	66	1.16
47242--47336	47	2.0	47	85	4	129	31	6	10	51	1.61
48478--48571	43	2.2	43	82	3	118	32	10	9	46	1.71
51755--51977	110	2.0	110	93	0	383	21	23	10	43	1.84
60698--60763	31	2.1	31	91	5	107	36	12	7	43	1.70
61468--61499	15	2.1	15	94	5	55	0	9	0	90	0.45
61472--61499	13	2.2	13	100	0	56	0	7	0	92	0.37
65599--65648	23	2.2	23	82	7	57	44	2	0	54	1.11
65744--65778	18	1.9	18	88	11	54	25	0	20	54	1.45
68546--68583	20	1.9	20	88	0	58	65	2	7	23	1.32
72184--72249	34	2.1	30	83	11	78	60	24	1	13	1.42
77335--77450	57	2.0	57	83	6	146	47	7	18	26	1.75
78584--78722	23	6.1	20	80	12	89	44	19	22	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78633--78735	23	4.4	23	88	2	143	45	21	21	11	1.83
78633--78756	46	2.6	47	84	5	162	44	20	23	12	1.84
78583--78732	69	2.1	67	84	11	187	45	18	22	13	1.84
82377--82437	33	2.0	32	87	12	92	34	0	13	52	1.40
92929--92958	15	2.0	15	93	0	51	56	0	3	40	1.16
95080--95121	22	2.0	22	90	4	68	57	0	0	42	0.99
95517--95564	25	2.0	24	91	4	78	35	2	0	62	1.07
96688--96743	29	2.0	28	82	10	69	62	16	0	21	1.32
96891--96923	15	2.2	16	89	10	52	72	0	6	21	1.05
97749--97819	30	2.3	31	76	9	74	22	45	0	32	1.53
102668--102705	9	4.0	9	93	6	58	31	2	2	63	1.22
104348--104385	20	2.0	20	89	5	60	55	0	0	44	0.99
104633--104703	33	2.2	33	86	0	97	52	7	4	36	1.48
109655--109710	24	2.3	24	93	0	103	23	57	0	19	1.41
109680--109776	31	3.0	34	67	22	98	25	55	1	17	1.48
111986--112172	52	3.6	52	87	0	275	26	16	22	34	1.95
114187--114220	17	2.0	18	88	11	54	52	0	0	47	1.00
124003--124075	30	2.4	30	100	0	146	21	13	30	34	1.92
124137--124189	21	2.5	21	78	0	61	33	16	24	24	1.96
125213--125307	40	2.3	41	87	5	131	36	24	6	32	1.81
125297--125335	17	2.3	17	90	0	60	46	25	12	15	1.81
135182--135261	33	2.4	33	87	4	108	30	22	13	33	1.93

Tables:   1

The End!