genome.fa.s9382.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009382.1 Kokia drynarioides strain JFW-HI SEQ_124089, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35114

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593--1202	29	20.9	28	73	11	449	31	32	5	29	1.79
590--1202	59	10.5	59	85	3	783	32	32	5	29	1.79
3818--3951	72	1.9	72	87	3	198	24	15	26	33	1.95
5981--6083	9	10.6	10	76	13	67	34	0	2	61	1.18
5981--6054	21	3.7	21	76	18	77	35	1	4	59	1.25
5983--6083	30	3.5	28	79	12	98	33	0	2	62	1.17
6022--6083	19	3.2	19	88	9	81	32	0	1	66	1.02
6022--6083	10	6.3	9	82	14	70	32	0	1	66	1.02
6044--6091	18	2.6	18	87	9	62	33	2	0	64	1.05
6988--7135	30	5.0	29	68	7	100	33	4	25	36	1.77
7034--7110	29	2.6	29	83	2	82	32	5	25	36	1.78
7005--7135	59	2.2	60	84	1	165	31	5	25	38	1.78
7034--7208	30	5.9	30	71	6	95	36	4	21	37	1.74
7025--7189	59	2.7	59	75	10	147	36	4	21	38	1.73
9113--9180	34	2.0	34	91	0	109	16	22	16	45	1.85
9057--9256	110	1.8	110	92	0	337	19	20	19	41	1.91
9147--9355	76	2.7	76	91	0	319	20	19	20	40	1.92
9249--9545	122	2.4	123	88	1	416	20	20	19	39	1.93
10209--10292	42	2.0	43	85	4	116	13	26	11	48	1.76
17391--17425	12	2.9	12	91	0	52	14	25	11	48	1.77
21313--21561	30	8.3	30	74	6	182	34	4	22	38	1.73
21292--21593	89	3.4	89	78	8	253	34	4	23	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21335--21559	60	3.8	60	80	4	215	35	3	20	40	1.70
21395--21582	60	3.2	58	77	10	150	34	3	21	40	1.71
22736--22791	29	2.0	28	89	3	85	32	3	3	60	1.31
22856--22893	18	2.1	19	90	5	60	23	5	2	68	1.23
23167--23274	54	2.0	54	88	0	162	38	29	12	18	1.88
24291--24469	92	2.0	92	84	1	234	35	21	9	33	1.86
24671--24778	54	2.0	54	88	0	162	38	29	12	18	1.88
25795--25973	92	2.0	92	84	1	234	35	21	9	33	1.86
28527--28560	17	1.9	18	94	5	61	41	26	2	29	1.70
30913--31081	9	18.0	9	68	21	73	32	6	1	59	1.33
30948--31026	28	2.8	28	81	11	90	31	7	0	60	1.24
30960--31083	28	4.4	27	75	12	90	31	6	2	59	1.35
30977--31082	56	1.9	56	82	7	135	31	4	2	61	1.31

Tables:   1

The End!