Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009383.1 Kokia drynarioides strain JFW-HI SEQ_124090, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1935
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34


Found at i:349 original size:24 final size:24

Alignment explanation


    Indices: 322--378  Score: 78
    Period size: 24  Copynumber: 2.4  Consensus size: 24

        312 GACTGATAAG

                 *                  
        322 AGTTTGACTCAAACAAATAAACAA
          1 AGTTTAACTCAAACAAATAAACAA

                   * *             *
        346 AGTTTAATTGAAACAAATAAACAG
          1 AGTTTAACTCAAACAAATAAACAA

                     
        370 AGTTTAACT
          1 AGTTTAACT

        379 AAAATATTAT


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26


Consensus pattern (24 bp):   
AGTTTAACTCAAACAAATAAACAA

Found at i:1855 original size:7 final size:7

Alignment explanation


    Indices: 1845--1890  Score: 51
    Period size: 7  Copynumber: 6.9  Consensus size: 7

       1835 AGCCCCTTAT

                   
       1845 CCCTTTC
          1 CCCTTTC

                   
       1852 CCCTTTC
          1 CCCTTTC

                   
       1859 CCCTTT-
          1 CCCTTTC

                   
       1865 CCC-TTC
          1 CCCTTTC

              *    
       1871 CCATTTC
          1 CCCTTTC

            *      
       1878 TCCTTTC
          1 CCCTTTC

            *     
       1885 TCCTTT
          1 CCCTTT

       1891 GCACCATTGT


Statistics
Matches: 34,  Mismatches: 3, Indels: 4
        0.83            0.07        0.10

Matches are distributed among these distances:
   5    2  0.06
   6    5  0.15
   7   27  0.79

ACGTcount: A:0.02, C:0.50, G:0.00, T:0.48


Consensus pattern (7 bp):   
CCCTTTC

Done.