Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009393.1 Kokia drynarioides strain JFW-HI SEQ_124100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90601
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:1149 original size:144 final size:142
Alignment explanation
Indices: 1001--1278 Score: 321
Period size: 144 Copynumber: 1.9 Consensus size: 142
991 GGTTATAACC
* *
1001 AAGGAACA-AAATTTCCAAATTGGTCAATTGGA-AAAG-AGTAATGGGTATTGAACCAACAAGTC
1 AAGGAACAGAAA-TTCCAAACTGGTCAA-TAGACAAAGCAG-AA-GGG-ATTGAACCAACAAGTC
* * *
1063 TATTGTTGGAGAGA-TACAAATAAATCAATTTTCTCAAATATCCAATTTCTAATGGGATAGATCC
61 TATTGTCGGAGAGACT-CAAACAAATCAAATTTCTCAAATATCCAATTTCTAATGGGATAGATCC
1127 ACTGATTTGGTTCCCTCG
125 ACTGATTTGGTTCCCTCG
* * ** * * * *
1145 AAGGATCAGAGATTGGAGACTGGTTAATAGACCCAAAGCAGAAGGGATTGGACCAACAATTCTAT
1 AAGGAACAGAAATTCCAAACTGGTCAATAGA--CAAAGCAGAAGGGATTGAACCAACAAGTCTAT
* *
1210 TGTCGGAGAGACTCAAACAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGATAGATCCATTG
64 TGTCGGAGAGACTCAAACAAATCAAATTTCTCAAATATCCAATTTCTAATGGGATAGATCCACTG
1275 ATTT
129 ATTT
1279 TGTTTATCCC
Statistics
Matches: 113, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
143 3 0.03
144 96 0.85
145 6 0.05
146 6 0.05
147 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (142 bp):
AAGGAACAGAAATTCCAAACTGGTCAATAGACAAAGCAGAAGGGATTGAACCAACAAGTCTATTG
TCGGAGAGACTCAAACAAATCAAATTTCTCAAATATCCAATTTCTAATGGGATAGATCCACTGAT
TTGGTTCCCTCG
Found at i:1313 original size:144 final size:145
Alignment explanation
Indices: 1047--1350 Score: 436
Period size: 144 Copynumber: 2.1 Consensus size: 145
1037 AGTAATGGGT
* * * * *
1047 ATTGAACCAACAAGTCTATTGTTGGAGAGATACAAATAAATCAATTTTCTCAAATATCCAATTTC
1 ATTGGACCAACAATTCTATTGTCGGAGAGATACAAACAAATCAAATTTCTCAAATATCCAATTTC
1112 TAATGGGATAGATCCACTGATTTGGTTCCCTCGAAGGATCAGAGATTGGAGACTGGTTAATAGAC
66 TAATGGGATAGATCCACTGATTTGGTTCCCTCGAAGGATCAGAGATTGGAGACTGGTTAATAGAC
*
1177 CCAAAGCAGAAGGG-
131 CCAAAGAAGAAGGGA
*
1191 ATTGGACCAACAATTCTATTGTCGGAGAGACT-CAAACAAGTCAAATTTCTCAAATATCCAATTT
1 ATTGGACCAACAATTCTATTGTCGGAGAGA-TACAAACAAATCAAATTTCTCAAATATCCAATTT
* * * * *
1255 CTAATGGGATAGATCCATTGATTTTGTTTATCC-C-AAGGATCAGAGATTGGAGATTGGTTAATT
65 CTAATGGGATAGATCCACTGA-TTTGGTT-CCCTCGAAGGATCAGAGATTGGAGACTGGTTAATA
*
1318 GGCCCAAAGAAGAAGGGA
128 GACCCAAAGAAGAAGGGA
1336 ATTGGACCAACAATT
1 ATTGGACCAACAATT
1351 TCACATCGAC
Statistics
Matches: 143, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
144 118 0.83
145 23 0.16
146 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (145 bp):
ATTGGACCAACAATTCTATTGTCGGAGAGATACAAACAAATCAAATTTCTCAAATATCCAATTTC
TAATGGGATAGATCCACTGATTTGGTTCCCTCGAAGGATCAGAGATTGGAGACTGGTTAATAGAC
CCAAAGAAGAAGGGA
Found at i:4937 original size:28 final size:28
Alignment explanation
Indices: 4905--5001 Score: 99
Period size: 28 Copynumber: 3.4 Consensus size: 28
4895 CCAAGTTCAA
*
4905 GTACCAAATTGGGTCCAAAAAAGTTTAG
1 GTACCAAATTGGGTCAAAAAAAGTTTAG
* *
4933 GTACCAAATTAGG--AAAAATTTGCAAGTTCAG
1 GTACCAAATTGGGTCAAAAA-----AAGTTTAG
*
4964 GTATCAAATTGGGTCAAAAAAAGTTTAG
1 GTACCAAATTGGGTCAAAAAAAGTTTAG
4992 GTACCAAATT
1 GTACCAAATT
5002 AAGAAAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
26 4 0.07
28 28 0.51
31 18 0.33
33 5 0.09
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (28 bp):
GTACCAAATTGGGTCAAAAAAAGTTTAG
Found at i:4961 original size:59 final size:58
Alignment explanation
Indices: 4862--5011 Score: 210
Period size: 59 Copynumber: 2.6 Consensus size: 58
4852 TTGAATCTAA
**
4862 AAAAAAAACTTAGGTACCAAATTAGAAAAAATACCAAGTTCAAGTACCAAATTGGGTC
1 AAAAAAAGTTTAGGTACCAAATTAGAAAAAATACCAAGTTCAAGTACCAAATTGGGTC
* * ** * *
4920 CAAAAAAGTTTAGGTACCAAATTAGGAAAAATTTGCAAGTTCAGGTATCAAATTGGGTC
1 AAAAAAAGTTTAGGTACCAAATTA-GAAAAAATACCAAGTTCAAGTACCAAATTGGGTC
4979 AAAAAAAGTTTAGGTACCAAATTAAGAAAAAAT
1 AAAAAAAGTTTAGGTACCAAATT-AGAAAAAAT
5012 GTCAAATTTA
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
58 21 0.26
59 58 0.73
60 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.23
Consensus pattern (58 bp):
AAAAAAAGTTTAGGTACCAAATTAGAAAAAATACCAAGTTCAAGTACCAAATTGGGTC
Found at i:8794 original size:54 final size:54
Alignment explanation
Indices: 8712--8822 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
8702 TCCAATCTAT
8712 TAGGTCTCCTATGCTCTTGTGCATAAAGGGCATTAATCATCTCATTTAAAGGTA
1 TAGGTCTCCTATGCTCTTGTGCATAAAGGGCATTAATCATCTCATTTAAAGGTA
8766 TAGGTCTCCTATGCTCTTGTGCATAAAGGGCATTAATCATCTCATTTAAAGGTA
1 TAGGTCTCCTATGCTCTTGTGCATAAAGGGCATTAATCATCTCATTTAAAGGTA
8820 TAG
1 TAG
8823 CTGATAGGTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (54 bp):
TAGGTCTCCTATGCTCTTGTGCATAAAGGGCATTAATCATCTCATTTAAAGGTA
Found at i:11005 original size:28 final size:28
Alignment explanation
Indices: 10971--11027 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
10961 ATATTAAACC
*
10971 AAGGATTAAGTATATATAATTGAGAACA
1 AAGGATTAAGTACATATAATTGAGAACA
10999 AAGGATTAAGTACATATAATTGAGAACA
1 AAGGATTAAGTACATATAATTGAGAACA
11027 A
1 A
11028 GATCTAAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.51, C:0.05, G:0.18, T:0.26
Consensus pattern (28 bp):
AAGGATTAAGTACATATAATTGAGAACA
Found at i:11889 original size:55 final size:54
Alignment explanation
Indices: 11803--11998 Score: 250
Period size: 55 Copynumber: 3.6 Consensus size: 54
11793 TCAAAAGAAG
* * *
11803 AAGAAGCAATATTCCACCATAACAA-CTGATTTAAACATATAAACAATCAATTCAA
1 AAGAAGCAATATTCCAACATGACAATC-GATTTAAACATATAAACAAT-GATTCAA
** * * *
11858 AAGAAATAATATTCTAGCATGACAATCGATTTAAACATATAAATAATGGATTCAA
1 AAGAAGCAATATTCCAACATGACAATCGATTTAAACATATAAACAAT-GATTCAA
* *
11913 AAGAAGCAATATTCCAACATGACACTCGATTTAAACATAGAAACAAATGATTCAA
1 AAGAAGCAATATTCCAACATGACAATCGATTTAAACATATAAAC-AATGATTCAA
*
11968 AAGAAGCAATATTCCAACATAACAATCGATT
1 AAGAAGCAATATTCCAACATGACAATCGATT
11999 CAATCCAAAT
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
55 118 0.97
56 4 0.03
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.24
Consensus pattern (54 bp):
AAGAAGCAATATTCCAACATGACAATCGATTTAAACATATAAACAATGATTCAA
Found at i:16697 original size:2 final size:2
Alignment explanation
Indices: 16690--16727 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
16680 ATCGTTGTAT
* *
16690 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TT TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
16728 TTATTTTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:16789 original size:54 final size:54
Alignment explanation
Indices: 16701--16803 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
16691 ATATATACAT
*
16701 ATATATATATATATATATTTATTATATTTATTTTTCTACCTATTTCGAAGGCAA
1 ATATATATACATATATATTTATTATATTTATTTTTCTACCTATTTCGAAGGCAA
* *
16755 ATATATATACATATTTATTT-TTATTTTTATTTTTTCTACCTATTTCGAA
1 ATATATATACATATATATTTATTATATTTA-TTTTTCTACCTATTTCGAA
16804 ATAAAAGTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.32, C:0.10, G:0.04, T:0.54
Consensus pattern (54 bp):
ATATATATACATATATATTTATTATATTTATTTTTCTACCTATTTCGAAGGCAA
Found at i:17856 original size:25 final size:26
Alignment explanation
Indices: 17809--17858 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17799 CTGTTTTGAT
*
17809 TTTTTTTTATTCAATCATGTTTTATA
1 TTTTTTTTATTCAATCATATTTTATA
17835 TTTTTTTTATT-AAT-ATTATTTTAT
1 TTTTTTTTATTCAATCA-TATTTTAT
17859 TTGTTTTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 10 0.45
26 11 0.50
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (26 bp):
TTTTTTTTATTCAATCATATTTTATA
Found at i:17865 original size:25 final size:24
Alignment explanation
Indices: 17802--17874 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 24
17792 TCTGTCACTG
*
17802 TTTTGATTTTTTTTTATTCAATCATG
1 TTTT-ATTTTTTTTTATT-AATCATA
17828 TTTTATATTTTTTTTATTAAT-ATTA
1 TTTTAT-TTTTTTTTATTAATCA-TA
17853 TTTTATTTGTTTTATGTATTAA
1 TTTTATTT-TTTT-T-TATTAA
17875 ATGTGCATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
24 3 0.07
25 16 0.39
26 16 0.39
27 6 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.68
Consensus pattern (24 bp):
TTTTATTTTTTTTTATTAATCATA
Found at i:17938 original size:2 final size:2
Alignment explanation
Indices: 17931--17973 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
17921 TCCATTCCAT
17931 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17973 T
1 T
17974 TTGTTTTAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:27096 original size:8 final size:9
Alignment explanation
Indices: 27069--27118 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
27059 TTTAAAAAAA
27069 TTTTCTTTC
1 TTTTCTTTC
27078 TTTTCTTTC
1 TTTTCTTTC
27087 TTTT-TTTC
1 TTTTCTTTC
*
27095 TTATTACTTTA
1 TT-TT-CTTTC
27106 TTTT-TTCTC
1 TTTTCTT-TC
27115 TTTT
1 TTTT
27119 TCAAATGACT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
8 8 0.23
9 20 0.57
10 2 0.06
11 5 0.14
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTCTTTC
Found at i:37031 original size:24 final size:24
Alignment explanation
Indices: 37004--37053 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
36994 TTAAATTTAT
*
37004 TTTAAATTTAAATTT-ATTTTAAAA
1 TTTAAATTT-AATTTAAGTTTAAAA
37028 TTTAAATTTAATTTAAGTTTAAAA
1 TTTAAATTTAATTTAAGTTTAAAA
37052 TT
1 TT
37054 ATTTTCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTAAATTTAATTTAAGTTTAAAA
Found at i:37033 original size:35 final size:35
Alignment explanation
Indices: 36959--37073 Score: 151
Period size: 35 Copynumber: 3.3 Consensus size: 35
36949 CCATACTCCC
* *
36959 TTTAAATTTATTTTAAAATTAAATTT-GTTTAAAA
1 TTTAAATTTATTTTAAATTTAAATTTATTTTAAAA
*
36993 ATTAAATTTATTTTAAATTTAAATTTATTTTAAAA
1 TTTAAATTTATTTTAAATTTAAATTTATTTTAAAA
* * * *
37028 TTTAAATTTAATTTAAGTTTAAAATTATTTTCAAA
1 TTTAAATTTATTTTAAATTTAAATTTATTTTAAAA
37063 TTTAAAATTTA
1 TTT-AAATTTA
37074 AAATAAATAA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
34 24 0.34
35 40 0.56
36 7 0.10
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (35 bp):
TTTAAATTTATTTTAAATTTAAATTTATTTTAAAA
Found at i:37052 original size:18 final size:18
Alignment explanation
Indices: 36959--37073 Score: 139
Period size: 17 Copynumber: 6.6 Consensus size: 18
36949 CCATACTCCC
36959 TTTAAATTTATTTTAAAA
1 TTTAAATTTATTTTAAAA
*
36977 -TTAAATTT-GTTTAAAA
1 TTTAAATTTATTTTAAAA
*
36993 ATTAAATTTATTTT-AAA
1 TTTAAATTTATTTTAAAA
37010 TTTAAATTTATTTTAAAA
1 TTTAAATTTATTTTAAAA
* *
37028 TTTAAATTTAATTT-AAG
1 TTTAAATTTATTTTAAAA
* *
37045 TTTAAAATTATTTTCAAA
1 TTTAAATTTATTTTAAAA
37063 TTTAAAATTTA
1 TTT-AAATTTA
37074 AAATAAATAA
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
16 7 0.08
17 46 0.55
18 24 0.29
19 6 0.07
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (18 bp):
TTTAAATTTATTTTAAAA
Found at i:37077 original size:7 final size:6
Alignment explanation
Indices: 36959--37075 Score: 68
Period size: 6 Copynumber: 20.0 Consensus size: 6
36949 CCATACTCCC
* * * * *
36959 TTTAAA TTT-AT TTTAAA ATTAAA TTT--G TTTAAAA ATTAAA TTT-AT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA
* *
37004 TTTAAA TTTAAA TTT-AT TTTAAAA TTTAAA TTT-AA TTTAAG TTTAAA
1 TTTAAA TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
37051 ATT-AT TTTCAAA TTTAAAA TTTAAA
1 TTTAAA TTT-AAA TTT-AAA TTTAAA
37076 ATAAATAAAA
Statistics
Matches: 82, Mismatches: 19, Indels: 20
0.68 0.16 0.17
Matches are distributed among these distances:
4 3 0.04
5 20 0.24
6 43 0.52
7 16 0.20
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:38961 original size:30 final size:30
Alignment explanation
Indices: 38900--39262 Score: 344
Period size: 30 Copynumber: 12.2 Consensus size: 30
38890 AGATTGTCCG
**
38900 AAAATCCCATTTTTAA-CCCTGAACTTCCA
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
* *
38929 AAAATTCCATTTTTAACCCCAAAACTTTCA
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
*
38959 AAAATCCCATTTTTAACCCCAAAACTTTCA
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
*
38989 AAAATCCCATTTTTTTAA-CCC-GAACTTCCA
1 AAAATCCCA--TTTTTAACCCCAAAACTTCCA
39019 AAAATCCCATTTTTAACCCCAAAACTTCCA
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
* * * *
39049 AAAATCACATTTTTAACCTCGAAACTTCCG
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
* *
39079 AAAATCCCATTTTTGATCCCAAAACTTCCA
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
* * *
39109 AAAATCCCATTTTTGACCCCAAACCTTCTA
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
* * **
39139 AAAATTACCA-TTTTACCCCCCGAACTTCCA
1 AAAA-TCCCATTTTTAACCCCAAAACTTCCA
* * ** * *
39169 AAAATCTCATTTTTGACCCTGAACCTTTCA
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
* * *
39199 AAAATTACCA--TTTCACACCC-GAACTTCCA
1 AAAA-TCCCATTTTTAAC-CCCAAAACTTCCA
* * * *
39228 AAAATCCCATTTTTGACCCCGAACCTTCCG
1 AAAATCCCATTTTTAACCCCAAAACTTCCA
39258 AAAAT
1 AAAAT
39263 TACCTTTTAC
Statistics
Matches: 273, Mismatches: 49, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
28 11 0.04
29 39 0.14
30 206 0.75
31 10 0.04
32 7 0.03
ACGTcount: A:0.36, C:0.31, G:0.04, T:0.30
Consensus pattern (30 bp):
AAAATCCCATTTTTAACCCCAAAACTTCCA
Found at i:39052 original size:90 final size:89
Alignment explanation
Indices: 38900--39299 Score: 393
Period size: 90 Copynumber: 4.5 Consensus size: 89
38890 AGATTGTCCG
* *
38900 AAAATCCCATTTTTAACCCTGAACTTCCAAAAATTCCATTTTTAACCCCAAAACTTTCAAAAATC
1 AAAATCCCATTTTTAACCCTGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAATC
*
38965 CCATTTTTAACCCCAAAACTTTCA
66 CCATTTTTAACCCCAAAACTTCCA
38989 AAAATCCCATTTTTTTAACCC-GAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAA
1 AAAATCCCA--TTTTTAACCCTGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAA
* * * *
39053 TCACATTTTTAACCTCGAAACTTCCG
64 TCCCATTTTTAACCCCAAAACTTCCA
* ** * * *
39079 AAAATCCCATTTTTGATCCCAAAACTTCCAAAAATCCCATTTTTGACCCCAAACCTTCTAAAAAT
1 AAAATCCCATTTTT-AACCCTGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAA-
* * **
39144 TACCA-TTTTACCCCCCGAACTTCCA
64 TCCCATTTTTAACCCCAAAACTTCCA
* * * * * *
39169 AAAATCTCATTTTTGACCCTGAACCTTTCAAAAATTACCA--TTTCACACCC-GAACTTCCAAAA
1 AAAATCCCATTTTTAACCCTGAA-CTTCCAAAAA-TCCCATTTTTAAC-CCCAAAACTTCCAAAA
* * *
39231 ATCCCATTTTTGACCCCGAACCTTCCGA
63 ATCCCATTTTTAACCCCAAAACTTCC-A
* * * *
39259 AAATTACC--TTTT-ACGCTCGAACTTCCAAAAATCTCATTTTT
1 AAAATCCCATTTTTAACCCT-GAACTTCCAAAAATCCCATTTTT
39300 GATTCCGAAC
Statistics
Matches: 255, Mismatches: 43, Indels: 27
0.78 0.13 0.08
Matches are distributed among these distances:
86 3 0.01
87 13 0.05
88 19 0.07
89 47 0.18
90 156 0.61
91 17 0.07
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.31
Consensus pattern (89 bp):
AAAATCCCATTTTTAACCCTGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAATC
CCATTTTTAACCCCAAAACTTCCA
Found at i:39329 original size:29 final size:29
Alignment explanation
Indices: 38900--39328 Score: 298
Period size: 30 Copynumber: 14.4 Consensus size: 29
38890 AGATTGTCCG
* * *
38900 AAAATCCCATTTTTAACCCTGAACTTCCA
1 AAAATACCATTTTTGACCCCGAACTTCCA
* * * *
38929 AAAATTCCATTTTTAACCCCAAAACTTTCA
1 AAAATACCATTTTTGACCCC-GAACTTCCA
* * * *
38959 AAAATCCCATTTTTAACCCCAAAACTTTCA
1 AAAATACCATTTTTGACCCC-GAACTTCCA
* * *
38989 AAAATCCCATTTTTTTAACCCGAACTTCCA
1 AAAATACCA-TTTTTGACCCCGAACTTCCA
* * *
39019 AAAATCCCATTTTTAACCCCAAAACTTCCA
1 AAAATACCATTTTTGACCCC-GAACTTCCA
* * *
39049 AAAAT-CACATTTTTAACCTCGAAACTTCCG
1 AAAATAC-CATTTTTGACCCCG-AACTTCCA
* **
39079 AAAATCCCATTTTTGATCCCAAAACTTCCA
1 AAAATACCATTTTTGA-CCCCGAACTTCCA
* * *
39109 AAAATCCCATTTTTGACCCCAAACCTTCTA
1 AAAATACCATTTTTGACCCCGAA-CTTCCA
***
39139 AAAATTACCATTTTACCCCCCGAACTTCCA
1 AAAA-TACCATTTTTGACCCCGAACTTCCA
* *
39169 AAAAT-CTCATTTTTGACCCTGAACCTTTCA
1 AAAATAC-CATTTTTGACCCCGAA-CTTCCA
*
39199 AAAATTACCA--TTTCACACCCGAACTTCCA
1 AAAA-TACCATTTTTGAC-CCCGAACTTCCA
*
39228 AAAATCCCATTTTTGACCCCGAACCTTCCGA
1 AAAATACCATTTTTGACCCCGAA-CTTCC-A
* *
39259 AAATTACC--TTTT-ACGCTCGAACTTCCA
1 AAAATACCATTTTTGAC-CCCGAACTTCCA
**
39286 AAAAT-CTCATTTTTGATTCCGAACCTTCCA
1 AAAATAC-CATTTTTGACCCCGAA-CTTCCA
*
39316 AAACTACCATTTT
1 AAAATACCATTTT
39329 GCCCCCGTGC
Statistics
Matches: 329, Mismatches: 46, Indels: 49
0.78 0.11 0.12
Matches are distributed among these distances:
26 1 0.00
27 6 0.02
28 12 0.04
29 84 0.26
30 188 0.57
31 37 0.11
32 1 0.00
ACGTcount: A:0.35, C:0.31, G:0.04, T:0.31
Consensus pattern (29 bp):
AAAATACCATTTTTGACCCCGAACTTCCA
Found at i:44860 original size:5 final size:5
Alignment explanation
Indices: 44834--44873 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
44824 AAAAAGAAAT
*
44834 TTAAA -TAAA -TAAA -TACA TTAAA TTAAA TTAAA TTAAA TTA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTA
44874 TTAAATGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 11 0.34
5 21 0.66
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
TTAAA
Found at i:44865 original size:23 final size:22
Alignment explanation
Indices: 44834--44879 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
44824 AAAAAGAAAT
44834 TTAAATAAA-TAAATACATTAAA
1 TTAAATAAATTAAAT-CATTAAA
*
44856 TTAAATTAAATTAAATTATTAAA
1 TTAAA-TAAATTAAATCATTAAA
44879 T
1 T
44880 GTATTCCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 11 0.52
24 5 0.24
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
TTAAATAAATTAAATCATTAAA
Found at i:50005 original size:55 final size:54
Alignment explanation
Indices: 49936--50100 Score: 242
Period size: 55 Copynumber: 3.0 Consensus size: 54
49926 CTTCTTTCTT
49936 AACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATGACAATCGATTTA
1 AACATATAAACAATCGATTCAAAAGAAGCAATATT-CAACATGACAATCGATTTA
* * *
49991 AATATATAAACAATCGATTCAAAAGAAGCAATATTCAGCATGACAGTCGATTTA
1 AACATATAAACAATCGATTCAAAAGAAGCAATATTCAACATGACAATCGATTTA
* * *
50045 AACATAAAAACAATTGATTCAAAAGAAGCAATATTTCAACATAACAA-CTGATTTA
1 AACATATAAACAATCGATTCAAAAGAAGCAATA-TTCAACATGACAATC-GATTTA
50100 A
1 A
50101 TCCAAATTTG
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
54 48 0.48
55 51 0.52
ACGTcount: A:0.50, C:0.16, G:0.10, T:0.25
Consensus pattern (54 bp):
AACATATAAACAATCGATTCAAAAGAAGCAATATTCAACATGACAATCGATTTA
Found at i:50057 original size:54 final size:55
Alignment explanation
Indices: 49936--50100 Score: 244
Period size: 54 Copynumber: 3.0 Consensus size: 55
49926 CTTCTTTCTT
49936 AACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATGACAATCGATTTA
1 AACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATGACAATCGATTTA
* * *
49991 AATATATAAACAATCGATTCAAAAGAAGCAATATT-CAGCATGACAGTCGATTTA
1 AACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATGACAATCGATTTA
* * * *
50045 AACATAAAAACAATTGATTCAAAAGAAGCAATATTTCAACATAACAA-CTGATTTA
1 AACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATGACAATC-GATTTA
50100 A
1 A
50101 TCCAAATTTG
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
54 50 0.51
55 49 0.49
ACGTcount: A:0.50, C:0.16, G:0.10, T:0.25
Consensus pattern (55 bp):
AACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACATGACAATCGATTTA
Found at i:56969 original size:49 final size:48
Alignment explanation
Indices: 56896--57310 Score: 297
Period size: 49 Copynumber: 8.5 Consensus size: 48
56886 CTCAATATCG
* *
56896 CGAAACATGAAGGGAAAGGTTTAAGTCGTAATGGCGAACCTAGTACCT
1 CGAAACATGAAGGGAAAGATTTAAGTCGCAATGGCGAACCTAGTACCT
* * * * *
56944 CTGAAACGTGAAGGGAAAGATTTAAGCCGCAACGGTGAATCC-AGTACCA
1 C-GAAACATGAAGGGAAAGATTTAAGTCGCAATGGCGAA-CCTAGTACCT
* * * **
56993 CGAAGACAGGAAGGGAAAGGTTTAAGTCGTAATGGAAAACCTAGTACCT
1 CGAA-ACATGAAGGGAAAGATTTAAGTCGCAATGGCGAACCTAGTACCT
** ** *
57042 CGAAGACATGAAGGGAAAGATTTAAAGTCGCAACAGAAAACCTAGTACTT
1 CGAA-ACATGAAGGGAAAGATTT-AAGTCGCAATGGCGAACCTAGTACCT
* * * * * * *
57092 CAGAGACATGAAGGGAAAGATCTAAGCCGCAATGACAGATCC-AATACCA
1 C-GAAACATGAAGGGAAAGATTTAAGTCGCAATGGC-GAACCTAGTACCT
* *
57141 CGAAGACA-CAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTAGTACCT
1 CGAA-ACATGAAGGGAAAGATTTAAGTCGCAATGGCGAACCTAGTACCT
* * * * * * *
57189 CAGAGACATGAAGGGAAAGATCTAAGCCACAACGGCGGATCC-AGTACCA
1 C-GAAACATGAAGGGAAAGATTTAAGTCGCAATGGC-GAACCTAGTACCT
* * * *
57238 CAAAGACA-CAA-GGAAAGGATTTAAGTCACAATGGCGAACATTA-TACCT
1 CGAA-ACATGAAGGGAAA-GATTTAAGTCGCAATGGCGAAC-CTAGTACCT
* *
57286 CAGAAGCATGAAAGGAAA-ATTTAAG
1 C-GAAACATGAAGGGAAAGATTTAAG
57311 CCGTAACGAC
Statistics
Matches: 284, Mismatches: 64, Indels: 38
0.74 0.17 0.10
Matches are distributed among these distances:
47 12 0.04
48 71 0.25
49 145 0.51
50 54 0.19
51 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (48 bp):
CGAAACATGAAGGGAAAGATTTAAGTCGCAATGGCGAACCTAGTACCT
Found at i:57192 original size:97 final size:97
Alignment explanation
Indices: 57037--57320 Score: 324
Period size: 97 Copynumber: 2.9 Consensus size: 97
57027 GAAAACCTAG
* * * ** ** *
57037 TACCTCGAAGACATGAAGGGAAAGATTTAAAGTCGCAACAGAAAACCTAGTACTTCAGAGACATG
1 TACCACGAAGACA-CAAGGGAAAGGTTT-AAGTCGCAATGGCGAACCTAGTACCTCAGAGACATG
*
57102 AAGGGAAAGATCTAAGCCGCAATGACAGATCCAA
64 AAGGGAAAGATCTAAGCCGCAACGACAGATCCAA
57136 TACCACGAAGACACAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTAGTACCTCAGAGACATGAA
1 TACCACGAAGACACAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTAGTACCTCAGAGACATGAA
* * * *
57201 GGGAAAGATCTAAGCCACAACGGCGGATCCAG
66 GGGAAAGATCTAAGCCGCAACGACAGATCCAA
* * *
57233 TACCACAAAGACACAA-GGAAAGGATTTAAGTCACAATGGCGAACATTA-TACCTCAGA-AGCAT
1 TACCACGAAGACACAAGGGAAAGG-TTTAAGTCGCAATGGCGAAC-CTAGTACCTCAGAGA-CAT
* * *
57295 GAAAGGAAA-ATTTAAGCCGTAACGAC
63 GAAGGGAAAGATCTAAGCCGCAACGAC
57321 GAATTTTGTA
Statistics
Matches: 161, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
96 21 0.13
97 114 0.71
98 14 0.09
99 12 0.07
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.15
Consensus pattern (97 bp):
TACCACGAAGACACAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTAGTACCTCAGAGACATGAA
GGGAAAGATCTAAGCCGCAACGACAGATCCAA
Found at i:57196 original size:147 final size:147
Alignment explanation
Indices: 56896--57214 Score: 403
Period size: 147 Copynumber: 2.2 Consensus size: 147
56886 CTCAATATCG
* * ** ** * *
56896 CGAA-ACATGAAGGGAAAGGTTTAAGTCGTAATGGCGAACCTAGTACCTCTGAAACGTGAAGGGA
1 CGAAGACATGAAGGGAAAGATTTAAGTCGCAACAGAAAACCTAGTACCTCAGAAACATGAAGGGA
* ** * * *
56960 AAGATTTAAGCCGCAACGGTGAATCCAGTACCACGAAGACAGGAAGGGAAAGGTTTAAGTCGTAA
66 AAGATCTAAGCCGCAACGCAGAATCCAATACCACGAAGACAGCAAGGGAAAGGTTTAAGTCGCAA
57025 TGGAAAACCTAGTACCT
131 TGGAAAACCTAGTACCT
* *
57042 CGAAGACATGAAGGGAAAGATTTAAAGTCGCAACAGAAAACCTAGTACTTCAGAGACATGAAGGG
1 CGAAGACATGAAGGGAAAGATTT-AAGTCGCAACAGAAAACCTAGTACCTCAGAAACATGAAGGG
*
57107 AAAGATCTAAGCCGCAATGACAG-ATCCAATACCACGAAGACA-CAAGGGAAAGGTTTAAGTCGC
65 AAAGATCTAAGCCGCAACG-CAGAATCCAATACCACGAAGACAGCAAGGGAAAGGTTTAAGTCGC
**
57170 AATGGCGAACCTAGTACCT
129 AATGGAAAACCTAGTACCT
*
57189 C-AGAGACATGAAGGGAAAGATCTAAG
1 CGA-AGACATGAAGGGAAAGATTTAAG
57215 CCACAACGGC
Statistics
Matches: 149, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
146 8 0.05
147 73 0.49
148 67 0.45
149 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.17
Consensus pattern (147 bp):
CGAAGACATGAAGGGAAAGATTTAAGTCGCAACAGAAAACCTAGTACCTCAGAAACATGAAGGGA
AAGATCTAAGCCGCAACGCAGAATCCAATACCACGAAGACAGCAAGGGAAAGGTTTAAGTCGCAA
TGGAAAACCTAGTACCT
Found at i:57963 original size:339 final size:338
Alignment explanation
Indices: 57343--58018 Score: 1271
Period size: 339 Copynumber: 2.0 Consensus size: 338
57333 ATGCAGATCT
57343 AATGTTGTGATGGAGCAGTTAAAGCCGTAACTGTAAAGCTTCTAAATCGAAGTCGTAGTAGATCG
1 AATGTTGTGATGGAGCAGTTAAAGCCGTAACTGTAAAGCTTCTAAATCGAAGTCGTAGTAGATCG
57408 AATCAAGATAGCGAATCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCCTCGACATCA
66 AATCAAGATAGCGAATCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCCTCGACATCA
57473 AAATCCTATTCGAGCATGCAGCAAAATTGGATAATAAGATCTCACTCTCCCCGCGGTCGTAGTGG
131 AAATCCTATTCGAGCATGCAGCAAAATTGGATAATAAGATCTCACTCTCCCCGCGGTCGTAGTGG
* * * *
57538 AGTGGGATGGAACTACCAGTCAAGTGCTGTCATTTTGAAAGTGGTCAATAGCGGAGTCGGGATTC
196 AGTGGGATGGAACTACAAGTCAAGAGCTGTCATTTTGAAAGTGGGCAATAGCGAAGTCGGGATTC
*
57603 AACAGGATTGGACAAAATTGATCTTCTTTTGGTCTTTGCTCCATTCCTGTTACACAGCAACGAGC
261 AACAGGATTGGACAAAATTGATCTTCTTTT-GCCTTTGCTCCATTCCTGTTACACAGCAACGAGC
57668 AAAGAAGGGTAGCG
325 AAAGAAGGGTAGCG
57682 AATGTTGTGATGGAGCAGTTAAAGCCGTAACTGTAAAGCTTCTAAATCGAAGTCGTAGTAGATCG
1 AATGTTGTGATGGAGCAGTTAAAGCCGTAACTGTAAAGCTTCTAAATCGAAGTCGTAGTAGATCG
*
57747 AATCAAGATAGCGAATTTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCCTCGACATCA
66 AATCAAGATAGCGAATCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCCTCGACATCA
*
57812 AAATCCTATTCGAGCATGCAGCAAAATTGGATAATAAGATCTCACTCTCCCCGTGGTCGTAGTGG
131 AAATCCTATTCGAGCATGCAGCAAAATTGGATAATAAGATCTCACTCTCCCCGCGGTCGTAGTGG
57877 AGTGGGATGGAACTACAAGTCAAGAGCTGTCATTTTGAAAGTGGGCAATAGCGAAGTCGGGATTC
196 AGTGGGATGGAACTACAAGTCAAGAGCTGTCATTTTGAAAGTGGGCAATAGCGAAGTCGGGATTC
*
57942 AACAGGATTGGACAAAATTGATCTTCTTTTGCCTTTGCTCCATTCCTGTTGCACAGCAACGAGCA
261 AACAGGATTGGACAAAATTGATCTTCTTTTGCCTTTGCTCCATTCCTGTTACACAGCAACGAGCA
58007 AAGAAGGGTAGC
326 AAGAAGGGTAGC
58019 TGTTGAAGCC
Statistics
Matches: 329, Mismatches: 8, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
338 45 0.14
339 284 0.86
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (338 bp):
AATGTTGTGATGGAGCAGTTAAAGCCGTAACTGTAAAGCTTCTAAATCGAAGTCGTAGTAGATCG
AATCAAGATAGCGAATCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCCTCGACATCA
AAATCCTATTCGAGCATGCAGCAAAATTGGATAATAAGATCTCACTCTCCCCGCGGTCGTAGTGG
AGTGGGATGGAACTACAAGTCAAGAGCTGTCATTTTGAAAGTGGGCAATAGCGAAGTCGGGATTC
AACAGGATTGGACAAAATTGATCTTCTTTTGCCTTTGCTCCATTCCTGTTACACAGCAACGAGCA
AAGAAGGGTAGCG
Found at i:58115 original size:19 final size:18
Alignment explanation
Indices: 58091--58156 Score: 80
Period size: 17 Copynumber: 3.6 Consensus size: 18
58081 TTAAATTGGT
58091 TTTAAATTTATTTTTAAAA
1 TTTAAATTTATTTTT-AAA
58110 TTTAAATTTATCTTTTTAAA
1 TTTAAATTTA--TTTTTAAA
**
58130 TTTAAATTT-GCTTTAAA
1 TTTAAATTTATTTTTAAA
58147 TTTAAATTTA
1 TTTAAATTTA
58157 ATTAAATTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
17 15 0.36
19 10 0.24
20 12 0.29
21 5 0.12
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (18 bp):
TTTAAATTTATTTTTAAA
Found at i:58994 original size:22 final size:22
Alignment explanation
Indices: 58969--59049 Score: 63
Period size: 22 Copynumber: 3.5 Consensus size: 22
58959 TAATTTTTTT
58969 AATAATAATAATGTTAATAATA
1 AATAATAATAATGTTAATAATA
* * *
58991 AATAAGAGTAATGAATAGCATTAATA
1 AATAATAATAATG-TTA--A-TAATA
* * *
59017 AATATTAATAATATTAATAATT
1 AATAATAATAATGTTAATAATA
*
59039 AATATTAATAA
1 AATAATAATAA
59050 AAAAGAACTT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
22 26 0.57
23 3 0.07
25 3 0.07
26 14 0.30
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (22 bp):
AATAATAATAATGTTAATAATA
Found at i:59047 original size:19 final size:19
Alignment explanation
Indices: 59010--59048 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
59000 AATGAATAGC
*
59010 ATTAATAAATATTAATAAT
1 ATTAATAAATAATAATAAT
* *
59029 ATTAATAATTAATATTAAT
1 ATTAATAAATAATAATAAT
59048 A
1 A
59049 AAAAAGAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTAATAAATAATAATAAT
Found at i:60085 original size:29 final size:30
Alignment explanation
Indices: 60033--60262 Score: 137
Period size: 29 Copynumber: 7.9 Consensus size: 30
60023 ACCCTTGAAC
60033 TTTTCC-AAAATT-CCATTTTAACCCCAAT
1 TTTTCCAAAAATTACCATTTTAACCCCAAT
60061 TTTTCCAAAAATTACCATTTT-ACCCTCGAA-
1 TTTTCCAAAAATTACCATTTTAACCC-C-AAT
* *
60091 -CTTCC-AAAATT-CTATTTTTAACCCCAAT
1 TTTTCCAAAAATTACCA-TTTTAACCCCAAT
* *
60119 TTCTCCAAAAATTACCATCTT-ACCCTCAA-
1 TTTTCCAAAAATTACCATTTTAACCC-CAAT
** * * *
60148 ACTT-CTAAAATTTCCATTTTAACCCTAAAT
1 TTTTCCAAAAATTACCATTTTAACCC-CAAT
* *
60178 TTTT-CAAAAATTA-CATTTTTACCCCAAAA
1 TTTTCCAAAAATTACCATTTTAACCCC-AAT
* * * * *
60207 CTTTCC-AAAATT-TCATTTTTGACCTCGAT
1 TTTTCCAAAAATTACCA-TTTTAACCCCAAT
* *
60236 TTTTCCAAAAATTATCTTTTTAACCCC
1 TTTTCCAAAAATTACCATTTTAACCCC
60263 GGATGTCTAA
Statistics
Matches: 154, Mismatches: 29, Indels: 36
0.70 0.13 0.16
Matches are distributed among these distances:
27 4 0.03
28 30 0.19
29 62 0.40
30 52 0.34
31 6 0.04
ACGTcount: A:0.33, C:0.27, G:0.01, T:0.39
Consensus pattern (30 bp):
TTTTCCAAAAATTACCATTTTAACCCCAAT
Found at i:60126 original size:58 final size:58
Alignment explanation
Indices: 60034--60249 Score: 253
Period size: 58 Copynumber: 3.7 Consensus size: 58
60024 CCCTTGAACT
*
60034 TTTCCAAAATTCCATTTTAACCCCAATTTTTCCAAAAATTACCATTTTACCCTCGAAC
1 TTTCCAAAATTCCATTTTAACCCCAATTTTTCCAAAAATTACCATTTTACCCTCAAAC
* * *
60092 -TTCCAAAATTCTATTTTTAACCCCAATTTCTCCAAAAATTACCATCTTACCCTCAAAC
1 TTTCCAAAATTCCA-TTTTAACCCCAATTTTTCCAAAAATTACCATTTTACCCTCAAAC
* *
60150 -TTCTAAAATTTCCATTTTAACCCTAAATTTTT-CAAAAATTA-CATTTTTACCC-CAAAAC
1 TTTCCAAAA-TTCCATTTTAACCC-CAATTTTTCCAAAAATTACCA-TTTTACCCTC-AAAC
* * * *
60208 TTTCCAAAATTTCATTTTTGACCTCGATTTTTCCAAAAATTA
1 TTTCCAAAATTCCA-TTTTAACCCCAATTTTTCCAAAAATTA
60250 TCTTTTTAAC
Statistics
Matches: 135, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
57 15 0.11
58 87 0.64
59 33 0.24
ACGTcount: A:0.34, C:0.26, G:0.01, T:0.38
Consensus pattern (58 bp):
TTTCCAAAATTCCATTTTAACCCCAATTTTTCCAAAAATTACCATTTTACCCTCAAAC
Found at i:62138 original size:47 final size:47
Alignment explanation
Indices: 62060--62154 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
62050 ATCTCTAAAA
* * *
62060 GCTAGAATATTAATTTTGGGGTTGCAGGTTAAAATTAGATGTGTTAC
1 GCTAGAATATTAATTTTGGGGATACAAGTTAAAATTAGATGTGTTAC
62107 GCTAGAATATTAATTTTGGGGATACAAGTTAAAATTAGATGTGTTAC
1 GCTAGAATATTAATTTTGGGGATACAAGTTAAAATTAGATGTGTTAC
62154 G
1 G
62155 TAATAATCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (47 bp):
GCTAGAATATTAATTTTGGGGATACAAGTTAAAATTAGATGTGTTAC
Found at i:62592 original size:31 final size:30
Alignment explanation
Indices: 62556--62634 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
62546 TTTTGGGTCC
62556 AATTTGGTACTCAAACTTGACACT-TTTTCCT
1 AATTTGGTACTCAAACTTGACACTCTTTT--T
*
62587 AATTTGGTAC-CTACACTTGACACTCTTTTT
1 AATTTGGTACTC-AAACTTGACACTCTTTTT
* *
62617 AAATTGGTACTTAAACTT
1 AATTTGGTACTCAAACTT
62635 TTTTGAGTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
30 16 0.39
31 21 0.51
32 4 0.10
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (30 bp):
AATTTGGTACTCAAACTTGACACTCTTTTT
Found at i:62637 original size:89 final size:90
Alignment explanation
Indices: 62511--62688 Score: 227
Period size: 89 Copynumber: 2.0 Consensus size: 90
62501 TAGTATATGA
* * * * * *
62511 ACTTAACACTTTTTTCTAATTTGGTATCTAAATTTTTTTGGGTCCAATTTGGTACTCA-AACTTG
1 ACTTAACACTCTTTTCTAAATTGGTATCTAAACTTTTTTGAGTCCAATTTGGTAC-AAGAACTTC
*
62575 ACACTTTTTCCTAATTTGGTACCTAC
65 ACACTTTTTCCTAATTTGATACCTAC
* *
62601 ACTTGACACTCTTTT-TAAATTGGTA-CTTAAACTTTTTTGAGTCCAATTTGGTACAAGAATTTC
1 ACTTAACACTCTTTTCTAAATTGGTATC-TAAACTTTTTTGAGTCCAATTTGGTACAAGAACTTC
*
62664 ACTCTTTTTCCTAATTTGATACCTA
65 ACACTTTTTCCTAATTTGATACCTA
62689 ATTTTTTTTA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
88 2 0.03
89 61 0.80
90 13 0.17
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (90 bp):
ACTTAACACTCTTTTCTAAATTGGTATCTAAACTTTTTTGAGTCCAATTTGGTACAAGAACTTCA
CACTTTTTCCTAATTTGATACCTAC
Found at i:62970 original size:31 final size:31
Alignment explanation
Indices: 62923--63029 Score: 98
Period size: 31 Copynumber: 3.5 Consensus size: 31
62913 GGTCCAAAAA
*
62923 AAGTTTTGGTACCAAATTAAGAAAAAATGTC
1 AAGTTTAGGTACCAAATTAAGAAAAAATGTC
* * *
62954 AAGTTCAGGTATCAAATTAGGTCAAAAAA-G--
1 AAGTTTAGGTACCAAATTAAG--AAAAAATGTC
*
62984 --GTTTAGGTACCAAATTAAGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAAGAAAAAATGTC
* *
63013 AAATTTAGGTATCAAAT
1 AAGTTTAGGTACCAAAT
63030 GTTATATTAA
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
26 5 0.08
27 1 0.02
28 16 0.27
31 30 0.51
32 1 0.02
33 6 0.10
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.28
Consensus pattern (31 bp):
AAGTTTAGGTACCAAATTAAGAAAAAATGTC
Found at i:63013 original size:59 final size:60
Alignment explanation
Indices: 62859--63029 Score: 229
Period size: 59 Copynumber: 2.9 Consensus size: 60
62849 TTGAATCTAA
* * ** * *
62859 AAAAAAAGCTTAGGTACCAAATT-AGAAAAAATGCCAAGTTCATATACCAAATTTGGTCC
1 AAAAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGGTATCAAATTAGGTCC
*
62918 AAAAAAAGTTTTGGTACCAAATTAAGAAAAAATGTCAAGTTCAGGTATCAAATTAGGT-C
1 AAAAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGGTATCAAATTAGGTCC
* * * *
62977 AAAAAAGGTTTAGGTACCAAATTAAGAAAAAGTGTCAAATTTAGGTATCAAAT
1 AAAAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGGTATCAAAT
63030 GTTATATTAA
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
59 70 0.71
60 29 0.29
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (60 bp):
AAAAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGGTATCAAATTAGGTCC
Found at i:66428 original size:144 final size:143
Alignment explanation
Indices: 66139--66434 Score: 316
Period size: 144 Copynumber: 2.1 Consensus size: 143
66129 TTCTTTTGGG
* * *
66139 ATAGGACCTTTTAATAGATTTGAATCAAGGTATAAGTACCACATCTTTGATAAACTACCAATACA
1 ATAGGACCTTTTAATAGATTAGAACCAAGGTATAAGTACCACATCTTTGAAAAACTACCAATACA
* * * * *
66204 AGAAGGGATTGAACCACTCAATTTGTTTCGGGAGAGACTTAATGAAGTTAAATTTGCTAAATTAC
66 AGAAGGGATTGAACCACTCAATCTGTTTCGGGAGAGA-TAAATGAACTCAAATTTGCTAAATGAC
** * *
66269 AAATTTCTTGGGGA
130 AAATAGCTAGAGGA
**
66283 ATAGGACCTTTTAATAGATTAGAACCAAGGCT-TAAGTACTGCATCTTTGAAAAACTACCAATAC
1 ATAGGACCTTTTAATAGATTAGAACCAAGG-TATAAGTACCACATCTTTGAAAAACTACCAATAC
* * *
66347 AAG-AGGGAATTGAACCACTCAATCTG-TTCTGGGAGAG-TGAAATGGACTCCAGTTT-CGTCAA
65 AAGAAGGG-ATTGAACCACTCAATCTGTTTC-GGGAGAGAT-AAATGAACTCAAATTTGC-T-AA
66408 ATGACACAA-AGCTAGAGGA
125 ATGACA-AATAGCTAGAGGA
*
66427 ATATGACC
1 ATAGGACC
66435 ACTAAAACTA
Statistics
Matches: 127, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
142 2 0.02
143 18 0.14
144 104 0.82
145 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (143 bp):
ATAGGACCTTTTAATAGATTAGAACCAAGGTATAAGTACCACATCTTTGAAAAACTACCAATACA
AGAAGGGATTGAACCACTCAATCTGTTTCGGGAGAGATAAATGAACTCAAATTTGCTAAATGACA
AATAGCTAGAGGA
Found at i:69824 original size:21 final size:20
Alignment explanation
Indices: 69794--69833 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
69784 TAGTATTTCA
*
69794 ATATAAAAATCGATTTAAAC
1 ATATAAAAATCAATTTAAAC
*
69814 ATATAAAAAATTAATTTAAA
1 ATAT-AAAAATCAATTTAAA
69834 AAAAGCAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (20 bp):
ATATAAAAATCAATTTAAAC
Found at i:69973 original size:55 final size:55
Alignment explanation
Indices: 69842--69973 Score: 176
Period size: 55 Copynumber: 2.4 Consensus size: 55
69832 AAAAAAGCAG
* * ** *
69842 TATTCCAACATGACAATCGATATAAACATTTAAATAAACGATTCAAAAGAATCAA
1 TATTCCAACATGACAATCAATTTAAACATAAAAACAAACGATTCAAAAGAATCAA
* *
69897 TATTTCAACATGACAATCAATTTAAACATAAAAACAACCGATTCAAAAGAAGT-AA
1 TATTCCAACATGACAATCAATTTAAACATAAAAACAAACGATTCAAAAGAA-TCAA
*
69952 TATTCCAACATAACAATCAATT
1 TATTCCAACATGACAATCAATT
69974 CATGATCATC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
55 66 0.99
56 1 0.01
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.26
Consensus pattern (55 bp):
TATTCCAACATGACAATCAATTTAAACATAAAAACAAACGATTCAAAAGAATCAA
Found at i:70710 original size:18 final size:19
Alignment explanation
Indices: 70676--70721 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
70666 TTTCAAAAAT
*
70676 TATAAAA-ATAAATATATA
1 TATAAAATATAAAAATATA
70694 -ATAAAATATAAAAATATA
1 TATAAAATATAAAAATATA
*
70712 TTTAAAATAT
1 TATAAAATAT
70722 TCACTTCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.25
18 10 0.42
19 8 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TATAAAATATAAAAATATA
Found at i:70720 original size:24 final size:24
Alignment explanation
Indices: 70657--70720 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 24
70647 TTTTAAATTA
* *
70657 AAAAATATATTT-CAA-AAATTAT
1 AAAAATATATTTAAAATAAAATAT
* * *
70679 AAAAATAAATATATAATAAAATAT
1 AAAAATATATTTAAAATAAAATAT
70703 AAAAATATATTTAAAATA
1 AAAAATATATTTAAAATA
70721 TTCACTTCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
22 10 0.30
23 2 0.06
24 21 0.64
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (24 bp):
AAAAATATATTTAAAATAAAATAT
Found at i:80256 original size:13 final size:13
Alignment explanation
Indices: 80238--80264 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80228 TTGCTCCTAT
80238 ACTTGATTTTTTA
1 ACTTGATTTTTTA
80251 ACTTGATTTTTTA
1 ACTTGATTTTTTA
80264 A
1 A
80265 TTAATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.59
Consensus pattern (13 bp):
ACTTGATTTTTTA
Found at i:80776 original size:3 final size:3
Alignment explanation
Indices: 80765--80800 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
80755 AGGAAGAAGA
*
80765 AGG AAG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
1 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
80801 TTGAGAATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (3 bp):
AGG
Found at i:82886 original size:29 final size:29
Alignment explanation
Indices: 82852--82909 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
82842 CTATAAGGAT
*
82852 CGGATTAAATTAACCTTTCTATTATTAAA
1 CGGATTAAATTAACCTTTATATTATTAAA
* *
82881 CGGATTAATTTAACTTTTATATTATTAAA
1 CGGATTAAATTAACCTTTATATTATTAAA
82910 AAAATAAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (29 bp):
CGGATTAAATTAACCTTTATATTATTAAA
Found at i:83971 original size:12 final size:12
Alignment explanation
Indices: 83956--84045 Score: 64
Period size: 12 Copynumber: 7.9 Consensus size: 12
83946 ATAATACCAA
83956 AACAACAAAAAT
1 AACAACAAAAAT
* *
83968 AACAACCAAAAC
1 AACAACAAAAAT
* *
83980 AGCAGCAAAAAT
1 AACAACAAAAAT
* * *
83992 AA-TACCAAAAC
1 AACAACAAAAAT
84003 AACAACAAAAAT
1 AACAACAAAAAT
*
84015 ---AATAAAAAT
1 AACAACAAAAAT
*
84024 AACAACAAAAAC
1 AACAACAAAAAT
84036 AAC-ACAAAAA
1 AACAACAAAAA
84046 CAGTAAAAAA
Statistics
Matches: 57, Mismatches: 17, Indels: 9
0.69 0.20 0.11
Matches are distributed among these distances:
9 8 0.14
11 14 0.25
12 35 0.61
ACGTcount: A:0.71, C:0.20, G:0.02, T:0.07
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:83998 original size:23 final size:21
Alignment explanation
Indices: 83942--84018 Score: 93
Period size: 23 Copynumber: 3.5 Consensus size: 21
83932 AAAACGCATA
83942 AAAAATAATACCAAAACA-AC
1 AAAAATAATACCAAAACACAC
*
83962 AAAAATAACAACCAAAACAGCAGC
1 AAAAATAA-TACCAAAACA-CA-C
83986 AAAAATAATACCAAAACAACAAC
1 AAAAATAATACCAAAAC-AC-AC
84009 AAAAATAATA
1 AAAAATAATA
84019 AAAATAACAA
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
20 8 0.16
21 9 0.18
23 21 0.43
24 11 0.22
ACGTcount: A:0.69, C:0.19, G:0.03, T:0.09
Consensus pattern (21 bp):
AAAAATAATACCAAAACACAC
Found at i:84027 original size:21 final size:20
Alignment explanation
Indices: 83909--84034 Score: 83
Period size: 20 Copynumber: 5.8 Consensus size: 20
83899 AATAATATTA
*
83909 AAAAAAACAGCGAAACAATAAT
1 AAAAAAACAAC-AAA-AATAAT
**
83931 AAAAACGCATA-AAAAATAAT
1 AAAAAAACA-ACAAAAATAAT
** *
83951 ACCAAAACAACAAAAATAAC
1 AAAAAAACAACAAAAATAAT
*
83971 AACCAAAACAGCAGCAAAAATAAT
1 AA--AAAA-A-CAACAAAAATAAT
83995 ACCAAAACAACAACAAAAATAAT
1 A--AAAA-AACAACAAAAATAAT
84018 AAAAATAACAACAAAAA
1 AAAAA-AACAACAAAAA
84035 CAACACAAAA
Statistics
Matches: 81, Mismatches: 14, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
19 1 0.01
20 20 0.25
21 18 0.22
22 10 0.12
23 14 0.17
24 16 0.20
25 1 0.01
26 1 0.01
ACGTcount: A:0.70, C:0.17, G:0.04, T:0.09
Consensus pattern (20 bp):
AAAAAAACAACAAAAATAAT
Found at i:84033 original size:44 final size:44
Alignment explanation
Indices: 83942--84034 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
83932 AAAACGCATA
* * *
83942 AAAAATAATACCAAAACAACAAAAATAACAACCAAAACAGCAGC
1 AAAAATAATACCAAAACAACAAAAATAACAACAAAAACAACAAC
* * *
83986 AAAAATAATACCAAAACAACAACAAA-AATAATAAAAATAACAAC
1 AAAAATAATACCAAAACAACAA-AAATAACAACAAAAACAACAAC
84030 AAAAA
1 AAAAA
84035 CAACACAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 39 0.93
45 3 0.07
ACGTcount: A:0.71, C:0.18, G:0.02, T:0.09
Consensus pattern (44 bp):
AAAAATAATACCAAAACAACAAAAATAACAACAAAAACAACAAC
Found at i:84082 original size:27 final size:27
Alignment explanation
Indices: 84027--84081 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
84017 TAAAAATAAC
84027 AACAAAAACAACACAAAAACAGTAAAA
1 AACAAAAACAACACAAAAACAGTAAAA
*
84054 AACAAAAAGCAAC-C-AAAATAGTAAAA
1 AACAAAAA-CAACACAAAAACAGTAAAA
84080 AA
1 AA
84082 AAGTACCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 13 0.50
27 9 0.35
28 4 0.15
ACGTcount: A:0.73, C:0.16, G:0.05, T:0.05
Consensus pattern (27 bp):
AACAAAAACAACACAAAAACAGTAAAA
Found at i:89257 original size:16 final size:16
Alignment explanation
Indices: 89236--89268 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
89226 ATGTGCTTAA
89236 ATCAGAGGAAGAATAG
1 ATCAGAGGAAGAATAG
*
89252 ATCAGAGGAGGAATAG
1 ATCAGAGGAAGAATAG
89268 A
1 A
89269 CTCTGTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.33, T:0.12
Consensus pattern (16 bp):
ATCAGAGGAAGAATAG
Found at i:89913 original size:11 final size:11
Alignment explanation
Indices: 89872--89914 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
89862 AGCTTTTAAT
*
89872 TTTAAAATTAGG
1 TTTAAATTTA-G
89884 TTTAAA-TTAG
1 TTTAAATTTAG
*
89894 TTTAAATTTAT
1 TTTAAATTTAG
89905 TTTAAATTTA
1 TTTAAATTTA
89915 AATTTATCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 7 0.24
11 16 0.55
12 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (11 bp):
TTTAAATTTAG
Found at i:89914 original size:6 final size:6
Alignment explanation
Indices: 89894--89979 Score: 58
Period size: 6 Copynumber: 15.0 Consensus size: 6
89884 TTTAAATTAG
* ** * **
89894 TTTAAA TTT-AT TTTAAA TTTAAA TTTATCCT TTTAAA TCTAAA TTT-GC
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTA--AA TTTAAA TTTAAA TTTAAA
89942 TTTAAA TTTAAA TTT-AA -TTAAA TTTAAA -TT-AA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
89980 AACTTGATAT
Statistics
Matches: 60, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
4 4 0.07
5 15 0.25
6 37 0.62
8 4 0.07
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:89964 original size:16 final size:15
Alignment explanation
Indices: 89943--89975 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
89933 TAAATTTGCT
89943 TTAAATTTAAATTTAA
1 TTAAATTTAAA-TTAA
89959 TTAAATTTAAATTAA
1 TTAAATTTAAATTAA
89974 TT
1 TT
89976 TAAAAACTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAAATTTAAATTAA
Found at i:89979 original size:10 final size:11
Alignment explanation
Indices: 89942--89979 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
89932 CTAAATTTGC
89942 TTTAAATTTAAA
1 TTTAAA-TTAAA
89954 TTT-AATTAAA
1 TTTAAATTAAA
89964 TTTAAATT-AA
1 TTTAAATTAAA
89974 TTTAAA
1 TTTAAA
89980 AACTTGATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 16 0.64
11 6 0.24
12 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTTAAATTAAA
Done.