Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000940.1 Kokia drynarioides strain JFW-HI SEQ_112098, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1257
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30


Found at i:134 original size:43 final size:43

Alignment explanation


    Indices: 52--136  Score: 107
    Period size: 43  Copynumber: 2.0  Consensus size: 43

         42 ATTAACATGT

                             *    *           *        
         52 TAAATTATATTACTTGACTCGTGTTAATATGGTGTCATGTTAC
          1 TAAATTATATTACTTGAATCGTATTAATATGGTGACATGTTAC

                           *    *         **          
         95 TAAATTATATTACTTTAATCTTATTAATATTTTGACATGTTA
          1 TAAATTATATTACTTGAATCGTATTAATATGGTGACATGTTA

        137 TTAATTGTGC


Statistics
Matches: 35,  Mismatches: 7, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  43   35  1.00

ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48


Consensus pattern (43 bp):   
TAAATTATATTACTTGAATCGTATTAATATGGTGACATGTTAC

Found at i:770 original size:45 final size:45

Alignment explanation


    Indices: 706--826  Score: 152
    Period size: 45  Copynumber: 2.7  Consensus size: 45

        696 ATAGCTCATC

                    *     *                 *        *   
        706 AAGCCAAGAATATCTGCCTCAGTTTGACGAGCTACCGCAATGCTA
          1 AAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATACTA

                                 *                      *
        751 AAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATACTC
          1 AAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATACTA

               **           *  *           
        796 AAGGGAAGGATATCAGGCTGAGTTTGACGAG
          1 AAGCCAAGGATATCAGCCTCAGTTTGACGAG

        827 GCATCGCGAT


Statistics
Matches: 65,  Mismatches: 11, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  45   65  1.00

ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20


Consensus pattern (45 bp):   
AAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATACTA
Done.