genome.fa.s9407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009407.1 Kokia drynarioides strain JFW-HI SEQ_124114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174649

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404--457	24	2.2	24	83	3	63	59	0	11	29	1.32
5315--5363	23	2.1	24	88	3	73	59	6	2	32	1.34
5319--5362	11	3.9	11	80	16	54	63	2	2	31	1.19
20506--20589	43	2.0	43	97	0	159	28	17	23	29	1.97
21513--21562	26	1.9	26	91	0	82	28	20	20	32	1.97
21566--21658	27	3.4	28	86	2	102	37	22	19	20	1.94
27776--28058	153	1.8	153	81	5	349	36	11	22	29	1.89
28078--28392	158	2.0	155	91	3	506	43	12	17	26	1.85
30356--30420	6	11.3	6	72	21	59	47	0	0	52	1.00
30356--30417	17	3.6	17	86	6	90	46	0	0	53	1.00
30383--30430	24	2.1	22	88	7	69	47	2	0	50	1.12
31123--31182	3	19.0	3	89	3	75	65	0	1	33	1.03
32133--32513	29	13.0	29	73	12	253	34	28	3	33	1.73
32162--32494	59	5.7	59	78	9	301	35	28	3	33	1.73
32162--32503	116	2.9	117	79	8	347	34	28	2	33	1.72
32547--32627	39	2.1	39	100	0	162	18	27	9	44	1.81
40618--40643	2	13.0	2	100	0	52	50	0	0	50	1.00
45720--45744	6	4.2	6	100	0	50	20	0	0	80	0.72
47215--47281	31	2.2	31	86	5	91	26	13	8	50	1.71
47483--47678	59	3.3	61	78	6	161	51	12	11	25	1.72
47755--47786	8	4.1	8	96	4	57	75	0	0	25	0.81
48159--48414	118	2.2	117	81	8	306	37	14	23	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60504--60572	11	5.6	11	76	18	57	49	0	1	49	1.09
61493--61541	25	2.0	25	91	0	80	51	0	0	48	1.00
89080--89157	28	2.9	27	76	16	65	28	0	10	61	1.28
89198--89240	18	2.5	18	81	7	54	16	0	6	76	0.99
89202--89245	18	2.3	21	77	18	51	15	0	6	77	0.97
89357--89389	15	2.3	15	89	5	50	21	0	9	69	1.15
93432--93463	4	8.0	4	92	0	55	28	0	21	50	1.49
95066--95118	24	2.2	24	96	0	97	9	13	45	32	1.75
95073--95146	24	3.1	24	86	0	85	12	16	44	27	1.82
95105--95162	24	2.4	24	88	0	80	18	15	48	17	1.82
95159--95238	27	3.0	27	94	0	133	13	8	40	37	1.76
99850--99892	19	2.2	20	87	8	61	27	0	2	69	1.00
102250--102334	42	2.0	42	90	0	134	45	16	7	30	1.74
107894--107930	19	1.9	19	88	0	56	13	13	13	59	1.62
109925--109968	22	2.0	22	90	0	70	47	9	4	38	1.56
111724--111748	2	12.5	2	100	0	50	48	0	0	52	1.00
113806--113863	30	1.9	31	85	3	82	22	8	10	58	1.58
119614--119652	16	2.4	17	87	12	55	17	2	0	79	0.84
122314--122353	20	2.1	19	86	9	55	27	2	12	57	1.48
128757--128799	21	2.0	21	100	0	86	37	27	9	25	1.87
148768--148793	3	8.7	3	100	0	52	30	0	0	69	0.89
149120--149159	21	1.9	21	89	0	62	15	2	5	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171510--171540	11	2.9	11	95	4	55	0	19	0	80	0.71
171510--171554	5	9.0	5	83	9	56	4	15	0	80	0.87

Tables:   1

The End!