Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009408.1 Kokia drynarioides strain JFW-HI SEQ_124115, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1758
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.37


Found at i:1221 original size:17 final size:18

Alignment explanation


    Indices: 1187--1222  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1177 TAAATTTCTA

                              
       1187 TCCAATTTATACCCTAAT
          1 TCCAATTTATACCCTAAT

                       *      
       1205 TCCAATTTA-ATCCTAAT
          1 TCCAATTTATACCCTAAT

             
       1222 T
          1 T

       1223 AACTCATTTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    8  0.47
  18    9  0.53

ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42


Consensus pattern (18 bp):   
TCCAATTTATACCCTAAT

Found at i:1626 original size:14 final size:15

Alignment explanation


    Indices: 1607--1635  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       1597 CTTTTTCTTT

                           
       1607 TTCCTTCCC-TTTTC
          1 TTCCTTCCCATTTTC

                           
       1621 TTCCTTCCCATTTTC
          1 TTCCTTCCCATTTTC

       1636 GTTTGAGCTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    9  0.64
  15    5  0.36

ACGTcount: A:0.03, C:0.41, G:0.00, T:0.55


Consensus pattern (15 bp):   
TTCCTTCCCATTTTC
Done.