genome.fa.s9414.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009414.1 Kokia drynarioides strain JFW-HI SEQ_124121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  234809

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601--678	23	3.3	22	81	13	84	10	30	21	37	1.87
614--709	25	3.9	24	77	13	88	13	27	19	39	1.89
601--706	48	2.2	48	81	3	115	11	30	20	37	1.88
3268--3343	37	2.1	37	97	0	143	25	5	15	53	1.62
10053--10093	17	2.4	17	91	4	64	24	24	0	51	1.49
18925--19048	23	5.3	23	80	5	106	12	21	20	45	1.84
18925--19083	23	6.8	22	72	18	99	13	22	20	44	1.86
18958--19048	46	2.0	46	84	4	121	14	19	20	45	1.85
18959--19098	69	2.0	66	86	10	192	14	21	19	45	1.85
27461--27510	21	2.3	22	89	3	75	26	0	8	66	1.19
33787--33855	31	2.2	31	82	7	86	46	11	8	33	1.71
38493--38988	181	2.7	180	84	0	607	37	19	16	26	1.93
40390--40626	118	2.0	118	97	0	447	34	18	15	32	1.92
46384--46423	20	2.0	20	90	4	64	65	0	2	32	1.06
46476--46511	18	2.0	18	88	0	54	61	0	5	33	1.19
47211--47240	15	2.0	15	93	0	51	36	0	0	63	0.95
47211--47269	22	2.8	20	77	10	55	38	0	1	59	1.08
49361--49459	49	2.0	49	100	0	198	29	8	14	48	1.72
57458--57500	14	3.3	13	81	9	52	58	0	6	34	1.25
64222--64290	31	2.2	31	97	0	129	62	4	26	7	1.40
64495--64534	6	6.5	6	85	5	53	50	0	2	47	1.14
64494--64532	19	2.1	19	90	0	60	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64956--64993	6	6.3	6	100	0	76	0	50	34	15	1.45
70309--70346	15	2.7	14	84	11	51	78	0	0	21	0.74
73789--73893	51	2.1	51	90	3	167	30	27	21	20	1.98
86233--86280	3	16.0	3	100	0	96	66	0	33	0	0.92
90010--90158	68	2.2	68	97	0	280	44	6	8	40	1.62
90301--90412	56	2.0	56	98	0	215	37	16	18	27	1.92
93875--93951	30	2.5	30	77	8	75	46	7	3	41	1.51
93939--93972	15	2.2	16	89	5	52	61	2	2	32	1.26
101264--101288	11	2.3	11	100	0	50	20	52	0	28	1.47
102349--102399	24	2.1	24	92	0	84	25	11	7	54	1.63
103628--103673	24	1.9	23	86	8	65	54	6	4	34	1.46
112038--112108	35	2.0	35	100	0	142	19	11	38	30	1.87
117236--117270	2	17.5	2	100	0	70	48	0	0	51	1.00
121615--121655	3	13.7	3	100	0	82	31	0	0	68	0.90
124709--125199	164	3.0	164	100	0	982	37	10	8	42	1.72
126935--126966	9	3.6	9	100	0	64	9	68	9	12	1.39
129635--129659	11	2.3	11	100	0	50	24	8	16	52	1.70
135159--135226	31	2.1	33	89	10	106	41	16	13	29	1.86
140542--140602	21	3.0	21	81	11	72	60	1	1	36	1.16
141044--141069	7	3.7	7	100	0	52	30	0	0	69	0.89
141357--141391	2	17.5	2	100	0	70	48	0	0	51	1.00
152372--152396	4	6.2	4	100	0	50	52	24	0	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154888--154950	23	2.7	22	76	9	54	41	3	3	52	1.33
156004--156062	29	2.0	30	93	3	102	49	11	6	32	1.66
159920--159978	29	2.0	29	96	0	109	35	13	23	27	1.92
168106--168142	17	2.2	17	90	0	56	16	13	24	45	1.83
183720--183759	20	2.0	20	100	0	80	55	30	10	5	1.54
185144--185190	23	2.0	23	100	0	94	57	12	4	25	1.54
191466--191498	16	2.1	16	94	0	57	30	0	0	69	0.88
192160--192190	13	2.4	13	94	0	53	29	0	0	70	0.87
192354--192398	23	1.9	23	82	13	56	64	11	6	17	1.46
192455--192556	12	8.8	12	77	6	77	69	17	4	7	1.31
192418--192498	32	2.4	34	89	8	130	64	17	9	8	1.48
192418--192520	32	3.1	32	86	9	111	66	16	8	8	1.44
192455--192550	24	4.2	24	75	10	92	69	16	5	8	1.31
192541--192588	21	2.2	22	88	3	71	68	18	6	6	1.32
199628--199664	19	1.9	19	100	0	74	32	18	10	37	1.86
204461--204683	95	2.4	92	85	6	288	38	17	8	34	1.81
204461--204683	91	2.4	93	86	5	290	38	17	8	34	1.81
204799--204847	21	2.5	19	80	12	55	57	0	0	42	0.99
205061--205149	40	2.2	41	84	7	112	25	7	2	64	1.33
205108--205203	29	3.3	28	75	15	88	27	6	2	64	1.28
205060--205193	20	6.8	19	70	20	82	26	6	2	64	1.30
205168--205213	22	2.0	23	84	12	60	30	2	2	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205180--205239	31	1.9	31	83	6	77	41	0	0	58	0.98
208446--208508	33	1.9	33	96	0	117	47	9	14	28	1.75
221769--221819	26	1.9	26	84	4	66	49	3	1	45	1.32
222517--222565	22	2.2	22	85	0	62	44	6	0	48	1.27

Tables:   1

The End!