Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009415.1 Kokia drynarioides strain JFW-HI SEQ_124122, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26763
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:13672 original size:13 final size:12

Alignment explanation


    Indices: 13649--13685  Score: 65
    Period size: 12  Copynumber: 3.0  Consensus size: 12

      13639 GTTACAAACA

                        
      13649 ATTTTTTCAAGT
          1 ATTTTTTCAAGT

                         
      13661 ATTTTTTCCAAGT
          1 ATTTTTT-CAAGT

                        
      13674 ATTTTTTCAAGT
          1 ATTTTTTCAAGT

      13686 GTTAAGTTGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  12   12  0.50
  13   12  0.50

ACGTcount: A:0.24, C:0.11, G:0.08, T:0.57


Consensus pattern (12 bp):   
ATTTTTTCAAGT
Done.