Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009418.1 Kokia drynarioides strain JFW-HI SEQ_124125, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1846
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36

Warning! 3 characters in sequence are not A, C, G, or T


Found at i:572 original size:201 final size:201

Alignment explanation


    Indices: 223--609  Score: 607
    Period size: 201  Copynumber: 1.9  Consensus size: 201

        213 CTTGACCTTC

                                        * *                                 *
        223 TTCTCAGTATCTCATCAGGAAAATGACCGCGTCGCTTGTTTCAATCCGCTTCTCTATATCTCATT
          1 TTCTCAGTATCTCATCAGGAAAATGACCACATCGCTTGTTTCAATCCGCTTCTCTATATCTCATC

                                                               *             
        288 AGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTATTGCTTCCACC
         66 AGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCATCTATTGCTTCCACC

                   *   *                  *  *              *                
        353 TGCTTCTTAGTGTCTCATCAAGAAGCTGGGTTTTGAAGATTTCGCTCGTTTTGAGCCTCATTTGG
        131 TGCTTCTGAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTCGCTCGCTTTGAGCCTCATTTGG

                  
        418 GTCTTT
        196 GTCTTT

                    *                                              *         
        424 TTCTCAGTGTCTCATCAGGAAAATGACCACATCGCTTGTTTCAATCCGCTTCTCTGTATCTCATC
          1 TTCTCAGTATCTCATCAGGAAAATGACCACATCGCTTGTTTCAATCCGCTTCTCTATATCTCATC

                   *                          *                           *  
        489 AGGAAGATGAATTTGGTTCACTTCTCCA-TATCTTATCAGGAAGCTAACCATCTATTGCTTCGAC
         66 AGGAAGACGAATTTGGTTCACTTCT-CAGTATCTCATCAGGAAGCTAACCATCTATTGCTTCCAC

                                                        *             
        553 CTGCTTCTCGA-TATCTCATCAAGAAGCTGGGGTTCGAAGATTTTGCTCGCTTTGAGC
        130 CTGCTTCT-GAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTCGCTCGCTTTGAGC

        610 GTAGGCCTAA


Statistics
Matches: 169,  Mismatches: 15, Indels: 4
        0.90            0.08        0.02

Matches are distributed among these distances:
 201  166  0.98
 202    3  0.02

ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35


Consensus pattern (201 bp):   
TTCTCAGTATCTCATCAGGAAAATGACCACATCGCTTGTTTCAATCCGCTTCTCTATATCTCATC
AGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCATCTATTGCTTCCACC
TGCTTCTGAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTCGCTCGCTTTGAGCCTCATTTGG
GTCTTT
Done.