genome.fa.s9420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009420.1 Kokia drynarioides strain JFW-HI SEQ_124127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97356

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11915--11973	31	1.9	31	85	0	82	50	10	1	37	1.46
22097--22133	1	37.0	1	100	0	74	100	0	0	0	0.00
22220--22323	28	3.5	28	79	12	102	26	7	19	46	1.77
29189--29257	28	2.5	28	83	4	77	17	0	30	52	1.45
29791--29885	37	2.9	30	72	19	82	47	1	2	49	1.20
29798--29869	37	1.9	37	91	0	117	47	1	2	48	1.25
42878--42911	17	1.9	18	88	5	52	41	23	2	32	1.69
47510--47570	31	2.0	31	90	0	95	34	11	11	42	1.77
64042--64086	17	2.6	17	92	0	72	20	8	20	51	1.73
64093--64170	35	2.3	35	93	2	131	23	11	30	34	1.90
67482--67517	12	3.0	12	87	0	54	58	0	0	41	0.98
69500--69525	2	13.0	2	100	0	52	50	0	0	50	1.00
74732--74778	22	2.1	22	96	0	85	21	8	23	46	1.78
75727--75765	17	2.3	17	90	0	60	15	12	25	46	1.81
75755--75850	41	2.3	41	87	3	140	32	4	25	38	1.75
79020--79054	16	2.3	15	90	5	52	65	2	0	31	1.07
79813--79844	3	10.7	3	93	0	55	28	0	3	68	1.04
84206--84254	14	3.5	14	78	10	64	59	0	22	18	1.38
84207--84262	28	2.0	28	100	0	112	53	0	25	21	1.46
89251--89353	23	4.5	22	80	4	91	38	25	22	13	1.91
89319--89372	23	2.3	23	100	0	108	42	22	25	9	1.83
91565--91609	23	2.0	23	86	0	63	31	8	2	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93188--93238	21	2.4	22	83	3	68	39	0	0	60	0.97
95064--95137	34	2.2	34	100	0	148	28	9	10	51	1.68

Tables:   1

The End!