genome.fa.s9421.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009421.1 Kokia drynarioides strain JFW-HI SEQ_124128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  199302

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4689--4719	2	15.5	2	100	0	62	0	51	0	48	1.00
9320--9354	9	3.7	9	92	7	52	14	2	0	82	0.77
9319--9360	18	2.3	19	79	4	50	21	2	0	76	0.90
9515--9565	27	1.9	26	88	11	77	78	1	3	15	0.99
9521--9582	30	2.0	31	84	6	81	75	1	6	16	1.08
11010--11036	2	13.5	2	100	0	54	51	0	0	48	1.00
16864--16994	40	3.3	40	88	4	183	25	21	21	31	1.98
18159--18224	33	2.0	33	93	0	114	37	7	16	37	1.77
18650--18739	45	2.0	45	97	0	171	35	16	11	36	1.84
19148--19195	24	1.9	26	84	16	66	45	0	22	31	1.53
19256--19401	22	6.5	22	90	4	220	9	20	26	43	1.82
19267--19487	69	3.3	69	80	15	284	11	23	23	40	1.88
19371--19444	36	2.1	36	92	0	121	13	27	20	39	1.90
19419--19498	25	3.2	25	94	1	133	12	30	21	36	1.90
19419--19513	50	1.9	50	84	4	129	13	28	20	37	1.90
25109--25274	86	1.9	86	92	0	278	35	10	10	42	1.75
26428--26463	15	2.4	15	95	0	63	55	0	13	30	1.39
26857--26910	14	3.5	15	80	19	58	59	1	0	38	1.08
27116--27157	21	2.0	22	90	4	68	40	9	11	38	1.75
40061--40144	42	2.0	42	93	4	143	63	0	20	16	1.32
43034--43123	44	2.0	44	100	0	180	45	22	8	23	1.80
54065--54447	29	12.9	30	77	8	322	32	2	28	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54065--54454	59	6.6	59	81	4	372	32	2	28	35	1.72
54117--54453	119	2.8	117	82	4	399	34	2	28	34	1.72
53961--54463	29	17.0	29	72	10	243	32	3	29	34	1.75
56833--57628	206	3.9	205	87	2	1078	21	23	20	34	1.96
56869--57627	411	1.8	411	87	3	1134	21	23	20	34	1.97
68921--69112	96	2.0	96	80	6	219	36	13	20	29	1.90
69419--69543	58	2.2	58	80	9	139	31	7	28	32	1.84
69508--69775	29	9.1	29	76	4	234	31	3	29	35	1.74
69419--69813	59	6.7	59	79	10	302	31	4	29	34	1.77
71106--71171	29	2.2	30	84	7	82	56	0	10	33	1.34
73460--73506	11	4.0	12	80	20	55	40	0	4	55	1.19
73884--73953	24	2.6	28	78	13	85	41	0	0	58	0.98
81221--81299	31	2.6	30	84	4	104	48	3	0	48	1.19
84493--84521	12	2.5	12	94	5	51	27	34	20	17	1.95
85564--85647	29	2.8	29	77	10	89	47	2	17	32	1.61
90212--90241	14	2.1	15	93	6	53	70	10	0	20	1.16
92991--93015	5	5.0	5	100	0	50	80	0	0	20	0.72
93445--93491	19	2.4	20	79	13	62	40	4	6	48	1.48
94244--94404	80	2.0	80	97	2	306	26	29	17	26	1.97
94611--94652	17	2.6	17	77	7	52	61	0	0	38	0.96
95760--95829	2	35.0	2	86	11	99	50	4	0	45	1.21
95749--95829	28	3.0	28	91	7	125	49	7	0	43	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96168--96263	41	2.3	41	96	0	174	36	28	6	29	1.81
103261--103347	17	5.1	17	84	0	102	36	3	4	55	1.38
103266--103338	34	2.1	34	92	0	119	35	4	5	54	1.42
104784--105255	29	16.1	29	71	14	197	36	24	2	35	1.71
104795--105016	60	3.8	61	76	10	178	38	22	1	37	1.63
104796--104959	90	1.8	89	85	6	233	37	21	0	40	1.58
104796--105016	30	7.5	28	72	14	144	38	22	1	38	1.63
104884--105073	57	3.3	56	73	13	138	38	22	2	36	1.66
105003--105370	29	12.8	29	72	11	181	36	26	4	32	1.78
104824--105357	88	6.1	86	75	13	289	37	25	3	33	1.72
109104--109150	17	2.8	17	78	9	60	78	6	6	8	1.08
109099--109146	17	2.6	19	77	12	55	79	4	8	8	1.06
109874--109926	21	2.5	21	76	14	54	79	0	15	5	0.91
109874--109933	6	9.5	6	74	16	50	78	0	16	5	0.92
110917--111335	50	8.4	50	75	5	321	36	17	31	14	1.90
110861--111344	151	3.2	151	76	7	396	36	17	30	15	1.91
111660--111767	39	2.8	40	80	7	123	25	34	18	22	1.96
111823--112685	208	4.2	208	83	3	954	36	18	22	22	1.95
111905--112677	208	3.7	207	85	3	977	36	18	22	22	1.95
113197--113289	17	5.5	17	82	0	105	36	3	4	55	1.35
113186--113289	6	17.8	6	72	8	54	38	2	4	53	1.37
113208--113280	34	2.1	34	92	0	119	35	4	5	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113858--114012	72	2.1	73	92	1	258	32	7	7	52	1.56
113917--113957	20	2.1	19	90	4	64	41	2	0	56	1.13
115103--115508	29	13.9	29	74	13	243	35	26	4	33	1.77
115099--115505	59	7.0	58	74	11	230	36	26	4	33	1.76
115224--115501	88	3.2	86	86	4	315	36	26	5	31	1.79
115104--115501	88	4.5	88	78	5	285	36	25	4	33	1.76
115340--115563	29	7.7	29	76	7	141	33	27	7	32	1.84
115099--115508	117	3.5	117	77	8	345	35	26	4	33	1.77
115243--115617	59	6.4	58	73	11	246	34	28	6	30	1.83
122359--122393	13	2.7	13	95	0	61	74	8	8	8	1.23
129075--129133	29	2.0	29	100	0	118	37	10	27	25	1.88
129215--129323	36	3.0	36	95	1	191	30	13	22	33	1.93
131083--131123	19	2.1	20	86	4	57	60	2	0	36	1.10
132534--132656	56	2.2	56	95	1	219	29	9	11	49	1.70
143158--143961	162	5.0	161	88	3	1140	39	20	17	22	1.92
143158--143961	317	2.5	316	88	5	1123	39	20	17	22	1.92
149338--149404	20	3.4	20	69	8	57	29	0	10	59	1.31
152596--152658	29	2.2	29	82	5	74	50	15	12	20	1.77
156658--156700	22	2.0	22	95	0	77	30	25	16	27	1.97
156230--157581	455	3.0	452	86	3	1756	37	19	15	28	1.91
168531--168585	21	2.6	21	70	16	51	43	3	5	47	1.44
174160--174214	29	1.9	28	88	3	83	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175870--176100	109	2.1	109	84	4	297	19	13	24	41	1.88
185479--185550	26	2.7	27	75	12	69	59	0	1	38	1.06
185992--186026	9	3.8	9	88	7	52	25	0	0	74	0.82
186549--186594	24	1.9	24	100	0	92	21	8	34	34	1.84
189085--189117	17	2.0	17	88	5	50	51	9	0	39	1.34
195803--195858	16	3.4	16	76	18	53	25	0	5	69	1.09

Tables:   1

The End!