Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009422.1 Kokia drynarioides strain JFW-HI SEQ_124129, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11923
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35


Found at i:10292 original size:18 final size:19

Alignment explanation


    Indices: 10252--10292  Score: 50
    Period size: 18  Copynumber: 2.3  Consensus size: 19

      10242 GGGCTTTTTG

                           * * 
      10252 TAATAACAAAAATAATAGA
          1 TAATAACAAAAATAAAAAA

                               
      10271 -AATAAC-AAAATAAAAAA
          1 TAATAACAAAAATAAAAAA

                 
      10288 TAATA
          1 TAATA

      10293 TTGGGAATTC


Statistics
Matches: 19,  Mismatches: 2, Indels: 3
        0.79            0.08        0.12

Matches are distributed among these distances:
  17    9  0.47
  18   10  0.53

ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20


Consensus pattern (19 bp):   
TAATAACAAAAATAAAAAA
Done.