genome.fa.s9423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009423.1 Kokia drynarioides strain JFW-HI SEQ_124130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84993

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653--699	23	2.1	22	84	4	58	36	10	4	48	1.57
1376--1439	17	3.6	17	74	12	56	51	7	3	37	1.47
3388--3433	23	1.9	25	91	8	78	21	2	10	65	1.35
3388--3433	25	1.9	23	86	8	65	21	2	10	65	1.35
5147--5193	18	2.7	18	87	9	53	29	4	4	61	1.34
5154--5193	18	2.2	18	91	8	64	30	5	5	60	1.40
13414--13638	71	3.2	71	88	0	324	33	20	21	24	1.97
16800--16866	33	2.0	33	100	0	134	29	17	20	31	1.96
19636--19661	2	13.0	2	100	0	52	50	0	0	50	1.00
24806--24870	32	2.0	32	90	0	103	41	10	24	23	1.86
27840--27890	13	3.8	14	80	15	63	66	9	1	21	1.31
27962--28004	2	21.5	2	100	0	86	51	0	0	48	1.00
28095--28243	60	2.4	61	80	8	160	69	6	5	18	1.31
28309--28341	13	2.4	14	85	5	50	75	6	0	18	1.00
28428--28459	3	10.7	3	100	0	64	68	0	0	31	0.90
29375--29414	19	2.1	19	86	9	55	20	7	5	67	1.34
32673--32976	30	10.2	30	75	7	226	34	4	22	38	1.75
32679--32929	90	2.8	89	81	6	251	34	4	21	39	1.75
34808--35472	40	16.8	40	76	7	554	26	16	23	32	1.96
34808--35472	79	8.4	79	74	11	497	26	16	23	32	1.96
34808--35468	119	5.6	118	80	7	481	27	16	23	32	1.96
35519--35646	50	2.6	50	87	2	186	23	22	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42694--42993	59	5.1	59	79	8	261	35	3	20	41	1.67
42694--42964	29	9.1	30	77	6	230	35	2	20	41	1.66
42762--42993	89	2.6	89	81	3	245	34	2	21	41	1.67
45589--45621	16	2.0	17	88	5	50	48	0	0	51	1.00
48177--48232	23	2.3	24	81	6	69	57	0	8	33	1.30
48166--48221	23	2.3	25	84	9	80	53	0	8	37	1.32
54168--54220	27	2.0	27	81	7	63	18	3	35	41	1.69
54174--54229	27	2.0	28	82	3	69	17	1	35	44	1.60
55193--55468	91	3.0	90	80	3	286	40	16	13	30	1.86
58496--58716	105	2.1	105	95	0	397	21	23	17	37	1.94
61860--61897	17	2.2	17	86	9	51	50	0	10	39	1.37
62465--62500	18	2.1	18	89	5	56	41	0	25	33	1.55
62729--62782	22	2.5	22	82	17	60	44	0	12	42	1.43
64780--64929	59	2.6	58	75	7	158	27	18	14	40	1.88
64977--65152	90	2.0	90	82	4	221	40	14	17	27	1.88
65324--65522	102	2.0	102	89	2	310	54	13	4	27	1.57
68133--68213	17	4.8	17	83	3	101	44	2	2	50	1.28
68133--68215	6	14.7	6	68	20	54	45	2	2	49	1.28
68138--68215	22	3.8	22	73	20	62	44	1	2	51	1.23
68132--68213	33	2.4	34	85	2	112	45	2	2	50	1.28
68182--68227	23	2.0	23	87	8	67	47	2	0	50	1.13
68846--68876	3	10.3	3	100	0	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69880--70232	30	12.0	29	74	8	214	38	27	1	32	1.64
69880--70142	59	4.4	58	77	4	242	38	26	0	34	1.62
82006--83018	207	4.9	207	91	0	1589	37	19	20	22	1.94
82839--83167	156	2.1	156	92	0	550	35	21	20	22	1.96
82995--83431	205	2.1	205	87	0	606	37	21	20	20	1.95
83749--83830	17	4.8	17	83	0	101	43	2	3	50	1.33
83749--83832	6	14.7	6	68	18	54	45	2	3	48	1.32
83748--83830	34	2.4	34	85	0	112	44	2	3	49	1.32
83801--83844	23	1.9	23	86	9	63	50	2	0	47	1.13
84465--84492	3	9.3	3	100	0	56	67	0	0	32	0.91

Tables:   1

The End!