Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009424.1 Kokia drynarioides strain JFW-HI SEQ_124131, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16124
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.33

Warning! 422 characters in sequence are not A, C, G, or T


Found at i:6137 original size:21 final size:21

Alignment explanation


    Indices: 6095--6137  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       6085 ACATTCATCA

                          *      
       6095 GTTCTGGTTTTGGTGAAATTG
          1 GTTCTGGTTTTGGTCAAATTG

                                  
       6116 GTTCTGGTTTTGG-CAAAGTTG
          1 GTTCTGGTTTTGGTCAAA-TTG

             
       6137 G
          1 G

       6138 AGTTTCAACA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  20    3  0.15
  21   17  0.85

ACGTcount: A:0.14, C:0.07, G:0.35, T:0.44


Consensus pattern (21 bp):   
GTTCTGGTTTTGGTCAAATTG

Found at i:8597 original size:28 final size:28

Alignment explanation


    Indices: 8556--8610  Score: 101
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       8546 GATATCTGAT

                                        
       8556 TTACTCCCTATTGACCCAAAGGTCATGC
          1 TTACTCCCTATTGACCCAAAGGTCATGC

                     *                 
       8584 TTACTCCCTGTTGACCCAAAGGTCATG
          1 TTACTCCCTATTGACCCAAAGGTCATG

       8611 ATGCTCATTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29


Consensus pattern (28 bp):   
TTACTCCCTATTGACCCAAAGGTCATGC

Found at i:12222 original size:12 final size:12

Alignment explanation


    Indices: 12205--12229  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

      12195 ATTAAATAAT

                        
      12205 TAATAGCATTCA
          1 TAATAGCATTCA

                        
      12217 TAATAGCATTCA
          1 TAATAGCATTCA

             
      12229 T
          1 T

      12230 CATAACAACA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36


Consensus pattern (12 bp):   
TAATAGCATTCA
Done.