genome.fa.s9425.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009425.1 Kokia drynarioides strain JFW-HI SEQ_124132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219986

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--4454	216	20.7	216	80	5	4257	28	16	13	41	1.86
4277--4602	180	1.8	180	89	1	519	27	17	12	42	1.85
4457--6318	216	8.7	216	81	2	2052	27	17	14	41	1.87
4457--6318	431	4.3	429	81	3	2116	27	17	14	41	1.87
4490--6318	857	2.1	860	83	3	2279	27	17	14	41	1.87
7555--7747	61	3.2	58	76	7	197	45	10	15	27	1.80
7566--7737	61	2.9	59	84	1	218	45	12	16	25	1.82
12269--12312	15	3.3	12	80	20	52	65	0	0	34	0.93
12275--12308	16	2.1	17	88	5	52	55	0	0	44	0.99
12951--13004	23	2.3	23	83	0	81	27	0	22	50	1.50
23532--23564	16	2.2	15	89	10	50	42	9	12	36	1.74
31507--31546	21	1.9	21	90	10	64	25	10	7	57	1.57
31671--31728	14	4.4	14	71	20	61	48	1	5	44	1.35
32774--32849	25	3.0	25	75	3	80	43	10	11	34	1.76
40716--40758	21	2.0	21	86	0	59	37	0	18	44	1.50
41928--42030	35	2.9	35	83	2	125	38	16	26	18	1.92
42521--42736	116	1.9	116	90	1	344	27	8	25	37	1.85
45773--45811	21	1.9	20	89	5	60	35	10	23	30	1.88
45916--45949	15	2.1	17	89	10	54	20	2	5	70	1.21
45951--46001	12	4.6	11	85	14	70	62	0	1	35	1.06
46423--46456	17	2.0	17	100	0	68	47	23	11	17	1.81
46464--46488	13	1.9	13	100	0	50	56	8	8	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55638--55731	47	2.0	47	91	0	152	25	15	9	48	1.75
66503--66540	20	1.9	20	100	0	76	31	10	15	42	1.81
67265--67368	51	2.0	51	98	0	199	25	19	5	49	1.70
68113--68146	17	2.1	16	88	5	50	38	5	2	52	1.41
69164--69256	8	10.8	8	72	19	62	43	0	1	55	1.06
69169--69255	9	9.9	9	72	18	67	42	0	1	56	1.07
69192--69284	43	2.1	44	88	9	138	37	0	2	60	1.09
70111--70146	19	1.9	19	94	5	65	50	2	2	44	1.31
70130--70219	38	2.3	39	88	7	137	34	2	4	58	1.30
70147--70206	19	3.2	19	68	17	61	30	1	6	61	1.31
70192--70244	26	2.2	25	86	10	74	35	0	1	62	1.06
70137--70235	38	2.6	38	85	6	103	36	1	4	58	1.24
75884--75924	17	2.3	18	87	4	57	9	7	0	82	0.83
77515--77609	45	2.1	45	92	0	154	31	15	30	22	1.95
84273--84315	5	9.0	5	80	10	54	76	2	2	18	1.00
84273--84313	14	2.9	14	89	7	57	78	2	2	17	0.98
84273--84315	19	2.3	19	91	0	68	76	2	2	18	1.00
85984--86057	34	2.2	34	80	0	85	27	18	21	32	1.97
86232--86285	18	3.0	18	74	15	58	25	16	35	22	1.95
86233--86292	17	3.5	17	77	6	59	21	16	36	25	1.94
93304--93470	87	1.9	89	87	2	248	31	9	20	37	1.85
93295--93470	44	4.0	44	86	1	221	31	9	21	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94097--94218	3	40.7	3	94	0	217	30	0	2	67	1.04
96455--96542	36	2.5	36	79	1	97	25	25	15	34	1.95
104094--104192	20	5.3	18	70	19	62	53	3	2	41	1.28
109346--109412	27	2.5	27	85	0	80	32	14	19	32	1.92
109499--109569	28	2.5	27	91	8	115	36	23	21	18	1.95
110604--110642	18	2.2	18	85	0	51	48	12	17	20	1.80
116124--116240	62	1.9	60	86	5	164	50	5	1	42	1.34
116257--116326	37	1.9	36	82	8	88	52	4	1	41	1.30
122056--122116	23	2.7	23	81	0	77	11	22	16	49	1.78
128785--128815	5	6.2	5	92	0	53	54	0	3	41	1.16
129021--129095	40	1.9	39	89	5	116	36	5	0	58	1.21
129033--129097	20	3.3	19	71	16	60	38	4	0	56	1.20
139231--139346	50	2.3	50	83	2	153	53	8	3	34	1.49
144125--144162	18	2.2	18	85	4	51	36	0	2	60	1.11
144131--144167	18	2.1	18	89	0	56	35	0	2	62	1.10
147658--147773	50	2.3	50	83	2	153	53	8	3	34	1.49
152552--152589	18	2.2	18	85	4	51	36	0	2	60	1.11
152558--152594	18	2.1	18	89	0	56	35	0	2	62	1.10
153857--153923	28	2.4	28	87	9	100	34	19	2	43	1.66
159072--159109	17	2.2	18	90	4	60	76	0	23	0	0.79
159415--159630	112	1.9	112	88	0	324	30	19	11	38	1.88
160075--160251	90	2.0	90	87	4	259	37	18	25	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160168--160407	49	4.9	49	73	5	180	36	15	27	20	1.93
160227--160405	98	1.8	98	85	2	252	34	16	28	20	1.94
160609--160891	80	3.5	78	74	15	270	31	25	17	25	1.97
160609--160891	122	2.3	121	90	3	442	31	25	17	25	1.97
160609--160890	42	6.9	42	77	13	277	31	25	17	25	1.97
162305--162407	30	3.4	29	77	2	107	39	21	1	36	1.65
163163--163218	26	2.2	26	96	0	103	26	25	17	30	1.97
167298--167369	28	2.6	29	84	8	96	29	18	29	23	1.97
167356--167540	28	6.6	28	81	8	139	19	17	26	36	1.94
167416--167540	28	4.5	28	86	0	151	18	15	28	38	1.91
167416--167540	56	2.2	56	90	2	189	18	15	28	38	1.91
170539--170603	19	3.4	19	69	19	55	38	1	3	56	1.24
170577--170615	19	1.9	20	85	15	53	43	5	0	51	1.24
177252--177284	15	2.1	16	88	5	50	42	15	27	15	1.86
181579--182059	240	2.0	240	99	0	944	31	15	16	35	1.91
184122--184169	23	2.1	23	84	7	62	64	6	25	4	1.35
184896--184944	12	4.5	11	80	14	57	81	0	16	2	0.78
184896--184944	10	4.5	10	80	14	53	81	0	16	2	0.78
189693--190069	145	2.6	145	86	0	504	24	22	20	32	1.98
193266--193297	7	4.6	7	92	0	55	40	43	0	15	1.47
193869--193933	30	2.2	30	94	0	112	9	12	26	52	1.68
195292--195633	52	6.6	52	87	0	479	27	14	23	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196266--196313	24	2.0	24	88	8	71	25	6	27	41	1.79
196367--196419	21	2.5	21	87	0	70	28	9	26	35	1.87
197008--197134	62	2.0	62	96	0	236	19	24	11	44	1.84
200072--200099	13	2.2	13	100	0	56	14	14	21	50	1.78
201065--201241	97	1.8	97	87	2	266	40	15	16	27	1.89
201490--201711	29	7.8	28	71	14	129	31	9	27	31	1.87
201491--201683	57	3.4	53	81	11	224	32	9	25	32	1.88
201468--201710	28	8.6	26	72	13	130	32	8	25	33	1.86
201665--201898	30	7.9	30	75	11	214	34	4	26	34	1.77
201491--201890	59	6.9	60	78	7	298	33	6	25	33	1.82
201659--201923	59	4.5	59	82	4	270	34	4	26	35	1.76
201790--201950	59	2.7	59	80	3	146	34	4	23	36	1.77
203665--203755	6	15.7	6	75	11	73	56	3	1	39	1.23
203650--203785	35	3.7	34	82	10	137	56	4	2	36	1.32
203650--203785	17	7.5	17	76	14	110	56	4	2	36	1.32
203683--203774	40	2.2	42	90	3	143	57	5	0	36	1.22
203664--203786	18	6.6	17	73	15	75	58	4	0	35	1.25
203782--204034	126	2.0	126	95	0	452	24	13	22	39	1.90
212354--212401	20	2.3	21	85	3	62	6	8	16	68	1.35
212368--212412	20	2.2	20	84	4	54	11	4	11	73	1.23
212406--212440	12	2.9	12	86	0	52	5	5	22	65	1.36
212397--212500	44	2.4	44	85	0	145	6	4	23	65	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212441--212486	12	3.9	12	80	8	51	4	6	26	63	1.38

Tables:   1

The End!