Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009427.1 Kokia drynarioides strain JFW-HI SEQ_124134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 447112
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Warning! 11 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:11636 original size:29 final size:29
Alignment explanation
Indices: 11595--11652 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
11585 TGTAATAACT
11595 TTTTAAATAATTTTTA-AATT-TATTAAAA
1 TTTTAAATAATTTTTATAATTAT-TTAAAA
11623 TTTTAAATAAATTTTTATAATTATTTAAAA
1 TTTTAAAT-AATTTTTATAATTATTTAAAA
11653 AATAACATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 8 0.30
29 8 0.30
30 10 0.37
31 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (29 bp):
TTTTAAATAATTTTTATAATTATTTAAAA
Found at i:16655 original size:20 final size:20
Alignment explanation
Indices: 16627--16713 Score: 67
Period size: 20 Copynumber: 4.4 Consensus size: 20
16617 TCACGTAAGC
*
16627 AAATGATTTTAAATTTATTA
1 AAATTATTTTAAATTTATTA
16647 AAATTATTTT---TTTAAATATA
1 AAATTATTTTAAATTT--AT-TA
*
16667 AAATTA-TTAAAATATT-TTA
1 AAATTATTTTAAAT-TTATTA
* *
16686 AAATTAATTTAAAATTATTA
1 AAATTATTTTAAATTTATTA
16706 AAATTATT
1 AAATTATT
16714 AAATAGTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 18
0.70 0.07 0.24
Matches are distributed among these distances:
17 3 0.06
19 14 0.26
20 33 0.62
22 1 0.02
23 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (20 bp):
AAATTATTTTAAATTTATTA
Found at i:16679 original size:9 final size:9
Alignment explanation
Indices: 16665--16716 Score: 68
Period size: 9 Copynumber: 5.4 Consensus size: 9
16655 TTTTTAAATA
16665 TAAAATTAT
1 TAAAATTAT
*
16674 TAAAATATTT
1 TAAAAT-TAT
16684 TAAAATTAATT
1 TAAAATT-A-T
16695 TAAAATTAT
1 TAAAATTAT
16704 TAAAATTAT
1 TAAAATTAT
16713 TAAA
1 TAAA
16717 TAGTTTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
9 21 0.55
10 9 0.24
11 8 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TAAAATTAT
Found at i:17055 original size:96 final size:98
Alignment explanation
Indices: 16862--17056 Score: 322
Period size: 96 Copynumber: 2.0 Consensus size: 98
16852 ATTTGAACCA
* * * *
16862 AACCATGACTACTTCTCCACTTGGATTCTGAACTAAACCATGGCTTCTTCTTCTTCCATCACTCT
1 AACCATGACTACTTCTCCACTTGGATTATGAACCAAACCATGGC-ACTTCTTCTTCCACCACTCT
*
16927 CTCAACCCTTCAAGGTTCTCTATTTCAATCTCAT
65 CCCAACCCTTCAAGGTTCTCTATTTCAATCTCAT
16961 AACCATGACTACTTCTCCACTTGGATTATGAACCAAACCAT-G-ACTTCTTCTTCCACCACTCTC
1 AACCATGACTACTTCTCCACTTGGATTATGAACCAAACCATGGCACTTCTTCTTCCACCACTCTC
17024 CCAACCCTTCAAGGTTCTCTATTTCAATCTCAT
66 CCAACCCTTCAAGGTTCTCTATTTCAATCTCAT
17057 TTCTTAGGAA
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
96 51 0.56
98 1 0.01
99 39 0.43
ACGTcount: A:0.25, C:0.33, G:0.08, T:0.34
Consensus pattern (98 bp):
AACCATGACTACTTCTCCACTTGGATTATGAACCAAACCATGGCACTTCTTCTTCCACCACTCTC
CCAACCCTTCAAGGTTCTCTATTTCAATCTCAT
Found at i:17664 original size:21 final size:20
Alignment explanation
Indices: 17622--17664 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
17612 AAATAATTTT
17622 AATAATTTTATATTTTGAAAA
1 AATAATTTTATATTTT-AAAA
17643 AATAATTTTAATAATTTTAAAA
1 AATAATTTT-AT-ATTTTAAAA
17665 TCATTTGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 9 0.45
22 6 0.30
23 5 0.25
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
AATAATTTTATATTTTAAAA
Found at i:18704 original size:18 final size:17
Alignment explanation
Indices: 18681--18725 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
18671 ATGGGAAAGT
*
18681 AATTAATTTCTAAGAGAA
1 AATTAATTTCTAA-AAAA
*
18699 AATTAAATTCTAAAAAA
1 AATTAATTTCTAAAAAA
18716 AATATAATTT
1 AAT-TAATTT
18726 AACATATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (17 bp):
AATTAATTTCTAAAAAA
Found at i:19936 original size:31 final size:31
Alignment explanation
Indices: 19879--19957 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 31
19869 TTTTGGGTTC
*
19879 AATTTGGTAC-TAAACTTGACACTTTTTCCT
1 AATTTGGTACTTAAACTTAACACTTTTTCCT
* **
19909 AATTTGGTACTTAAACTTAACATTTTTTTTT
1 AATTTGGTACTTAAACTTAACACTTTTTCCT
* *
19940 AAGTTGGTACTTTAACTT
1 AATTTGGTACTTAAACTT
19958 TTTGGGGTCC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 10 0.24
31 32 0.76
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48
Consensus pattern (31 bp):
AATTTGGTACTTAAACTTAACACTTTTTCCT
Found at i:25745 original size:201 final size:201
Alignment explanation
Indices: 25400--25804 Score: 801
Period size: 201 Copynumber: 2.0 Consensus size: 201
25390 CTACATTCAC
25400 TTCAGAGAATGGTGCAGAACCAGTGGGACGAATTCCATGATTTTTCATCAACAGCTCATTATTTT
1 TTCAGAGAATGGTGCAGAACCAGTGGGACGAATTCCATGATTTTTCATCAACAGCTCATTATTTT
25465 GTTCAGCCACTAAAAGGCATGAAATCAATTCAGAATACCTTTTAAAACCTTTTTCACGATATTGC
66 GTTCAGCCACTAAAAGGCATGAAATCAATTCAGAATACCTTTTAAAACCTTTTTCACGATATTGC
25530 TGCTGCAGGAGCACATTAGTAGCATGAAAGGTTGAAAATGTTTTCTCTAACAAGTCCTCATCAGT
131 TGCTGCAGGAGCACATTAGTAGCATGAAAGGTTGAAAATGTTTTCTCTAACAAGTCCTCATCAGT
25595 TATGTT
196 TATGTT
25601 TTCAGAGAATGGTGCAGAACCAGTGGGACGAATTCCATGATTTTTCATCAACAGCTCATTATTTT
1 TTCAGAGAATGGTGCAGAACCAGTGGGACGAATTCCATGATTTTTCATCAACAGCTCATTATTTT
*
25666 GTTCAGCCACTAAAAGGCATGAAATTAATTCAGAATACCTTTTAAAACCTTTTTCACGATATTGC
66 GTTCAGCCACTAAAAGGCATGAAATCAATTCAGAATACCTTTTAAAACCTTTTTCACGATATTGC
25731 TGCTGCAGGAGCACATTAGTAGCATGAAAGGTTGAAAATGTTTTCTCTAACAAGTCCTCATCAGT
131 TGCTGCAGGAGCACATTAGTAGCATGAAAGGTTGAAAATGTTTTCTCTAACAAGTCCTCATCAGT
25796 TATGTT
196 TATGTT
25802 TTC
1 TTC
25805 TCCACATAAT
Statistics
Matches: 203, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 203 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (201 bp):
TTCAGAGAATGGTGCAGAACCAGTGGGACGAATTCCATGATTTTTCATCAACAGCTCATTATTTT
GTTCAGCCACTAAAAGGCATGAAATCAATTCAGAATACCTTTTAAAACCTTTTTCACGATATTGC
TGCTGCAGGAGCACATTAGTAGCATGAAAGGTTGAAAATGTTTTCTCTAACAAGTCCTCATCAGT
TATGTT
Found at i:26854 original size:17 final size:17
Alignment explanation
Indices: 26832--26864 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26822 TTTAATGAGA
*
26832 GTTTAAAGGAGTTAGAG
1 GTTTAAAAGAGTTAGAG
26849 GTTTAAAAGAGTTAGA
1 GTTTAAAAGAGTTAGA
26865 CTTCCACTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.30
Consensus pattern (17 bp):
GTTTAAAAGAGTTAGAG
Found at i:37650 original size:3 final size:3
Alignment explanation
Indices: 37642--37694 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
37632 TGGTTGGTTA
37642 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
37690 TTC TT
1 TTC TT
37695 ATTATTATTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:37699 original size:3 final size:3
Alignment explanation
Indices: 37693--37776 Score: 161
Period size: 3 Copynumber: 28.3 Consensus size: 3
37683 CTTCTTCTTC
37693 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37741 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
37777 AGTTCTGGAC
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.03
3 78 0.98
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:41408 original size:188 final size:189
Alignment explanation
Indices: 41083--41462 Score: 512
Period size: 188 Copynumber: 2.0 Consensus size: 189
41073 AAATTCACAA
* * * * *
41083 AATCATTTATTAATGCGAAAAGCTAAAACTTGATAAAACTATGATAAAGAGAGTATGTCGCTCGA
1 AATCATTTATTAATGCGAAAAGCAAAAACTTAATAAAACTACGATAAAGAGACTAAGTCGCTCGA
** * *
41148 GAATAAGATCCTTAAGTGTAATGGAGAGCCTAATTTGACGTATCAAATTACGACATATCAATTTT
66 GAATAAGATCCTTAAGTGTAATGGAGAGCCTAATTTGACGTATCAAATTAAAACAAATCAATTAT
* * * * * * *
41213 TTAATACTTCCATAATGATAATAGTGCAAGAACTATACTGGTACTTTTCTTTACAC-TC
131 CTAATACTTCCATAATGATAACAATGCAAAAACTACACTGGTACTTGTCTTGACACTTC
* * *
41271 AATCATTTATTAATGCGAAAAGCAAAAACTTAATAAAACTACGGTAAAG-GCACTAAGTCTCTTG
1 AATCATTTATTAATGCGAAAAGCAAAAACTTAATAAAACTACGATAAAGAG-ACTAAGTCGCTCG
* * * *
41335 AGAATAAGTTCCTTTAGTGTAATGGAGAGCCTCATTTGATGTATCAAATTAAAACAAATCAATTA
65 AGAATAAGATCCTTAAGTGTAATGGAGAGCCTAATTTGACGTATCAAATTAAAACAAATCAATTA
* *
41400 TCTAATACTTTCATAATGATAACAATTCAAAAACTACACTGGTACTTGTCTTGACACTTC
130 TCTAATACTTCCATAATGATAACAATGCAAAAACTACACTGGTACTTGTCTTGACACTTC
41460 AAT
1 AAT
41463 GTCACTCACT
Statistics
Matches: 165, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
187 1 0.01
188 159 0.96
189 5 0.03
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (189 bp):
AATCATTTATTAATGCGAAAAGCAAAAACTTAATAAAACTACGATAAAGAGACTAAGTCGCTCGA
GAATAAGATCCTTAAGTGTAATGGAGAGCCTAATTTGACGTATCAAATTAAAACAAATCAATTAT
CTAATACTTCCATAATGATAACAATGCAAAAACTACACTGGTACTTGTCTTGACACTTC
Found at i:54052 original size:6 final size:6
Alignment explanation
Indices: 54041--54121 Score: 53
Period size: 6 Copynumber: 13.7 Consensus size: 6
54031 AAGCCGAGTG
* * * * *
54041 TTTTTA TTTTTAA TTATTTA -TTATA CTTTAA TGTT-A TTTTTA TTTTCA
1 TTTTTA TTTTT-A TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
54089 TTTTCA TTTTTTA TTTTTA -TTTTA -TTTTA TTTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTT
54122 ATTATGCACT
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 17 0.28
6 32 0.52
7 9 0.15
8 3 0.05
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:54099 original size:19 final size:18
Alignment explanation
Indices: 54077--54116 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
54067 TTTAATGTTA
54077 TTTTTATTTTCATTTTCAT
1 TTTTTATTTTCATTTT-AT
*
54096 TTTTTATTTTTATTTTAT
1 TTTTTATTTTCATTTTAT
54114 TTT
1 TTT
54117 ATTTTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTATTTTCATTTTAT
Found at i:54104 original size:25 final size:24
Alignment explanation
Indices: 54074--54126 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
54064 TACTTTAATG
54074 TTATTTTTATTTTCATTTTCATTTT-
1 TTATTTTTATTTT-ATTTT-ATTTTA
54099 TTATTTTTATTTTATTTTATTTTA
1 TTATTTTTATTTTATTTTATTTTA
54123 TTAT
1 TTAT
54127 GCACTATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 5 0.19
24 9 0.33
25 13 0.48
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (24 bp):
TTATTTTTATTTTATTTTATTTTA
Found at i:54105 original size:5 final size:5
Alignment explanation
Indices: 54078--54124 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
54068 TTAATGTTAT
*
54078 TTTTA TTTTCA TTTTCA TTTT- TTAT- TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTT-A TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
54125 ATGCACTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 6 0.16
5 21 0.55
6 11 0.29
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:55046 original size:8 final size:9
Alignment explanation
Indices: 55031--55068 Score: 58
Period size: 9 Copynumber: 4.0 Consensus size: 9
55021 TTTTATTGTT
55031 TAAAAAAAA
1 TAAAAAAAA
55040 TAAAAAAAA
1 TAAAAAAAA
55049 TAAAAAAAA
1 TAAAAAAAA
55058 TTGAAAAAAAA
1 -T-AAAAAAAA
55069 ATGGAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 18 0.67
10 1 0.04
11 8 0.30
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:71495 original size:48 final size:48
Alignment explanation
Indices: 71424--71520 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
71414 CCTTTCATCG
*
71424 TATAGATAATGTCTCCAGATTTTCAAAGCAAAAACCACAGTGGCTAGC
1 TATAGATAATGTCTCCAGATTTTCAAAGCAAAAACCACAGCGGCTAGC
*
71472 TATAGATAATGTCTTCAGATTTTCAAAGCAAAAACCACAGCGGCTAGC
1 TATAGATAATGTCTCCAGATTTTCAAAGCAAAAACCACAGCGGCTAGC
71520 T
1 T
71521 CTAAATCATG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (48 bp):
TATAGATAATGTCTCCAGATTTTCAAAGCAAAAACCACAGCGGCTAGC
Found at i:76316 original size:84 final size:85
Alignment explanation
Indices: 76211--76384 Score: 332
Period size: 84 Copynumber: 2.1 Consensus size: 85
76201 ATAAAATTCA
*
76211 TACTTCGTAAACTATACGTAATTTAATCATTTCTACTTCCAAATATATCATCTCAATCCAATTGA
1 TACTTCATAAACTATACGTAATTTAATCATTTCTACTTCCAAATATATCATCTCAATCCAATTGA
76276 ATGATAATTCTCACCTTATT
66 ATGATAATTCTCACCTTATT
76296 TACTTCAT-AACTATACGTAATTTAATCATTTCTACTTCCAAATATATCATCTCAATCCAATTGA
1 TACTTCATAAACTATACGTAATTTAATCATTTCTACTTCCAAATATATCATCTCAATCCAATTGA
76360 ATGATAATTCTCACCTTATT
66 ATGATAATTCTCACCTTATT
76380 TACTT
1 TACTT
76385 ACCATGCTTA
Statistics
Matches: 88, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 81 0.92
85 7 0.08
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.41
Consensus pattern (85 bp):
TACTTCATAAACTATACGTAATTTAATCATTTCTACTTCCAAATATATCATCTCAATCCAATTGA
ATGATAATTCTCACCTTATT
Found at i:91965 original size:20 final size:21
Alignment explanation
Indices: 91940--91987 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
91930 TAGTATATAG
*
91940 GATTTAATGTTTAAG-TTTTA
1 GATTTAATGTTTAAGATTTGA
91960 GATTTAATGTTTAAGATTTGA
1 GATTTAATGTTTAAGATTTGA
91981 GATTTAA
1 GATTTAA
91988 GAATCGAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (21 bp):
GATTTAATGTTTAAGATTTGA
Found at i:92297 original size:13 final size:13
Alignment explanation
Indices: 92279--92303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92269 ATGATTTGAT
92279 TTGATTATGTAAA
1 TTGATTATGTAAA
92292 TTGATTATGTAA
1 TTGATTATGTAA
92304 TCATGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTGATTATGTAAA
Found at i:96763 original size:3 final size:3
Alignment explanation
Indices: 96755--96794 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
96745 CCCACAAATT
96755 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
96795 ATTTTTTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:97752 original size:12 final size:12
Alignment explanation
Indices: 97735--97777 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
97725 TCAAAGTAAG
97735 AAAATAATTTAT
1 AAAATAATTTAT
* *
97747 AAAATAA-TAAG
1 AAAATAATTTAT
97758 AAAATAATTTAT
1 AAAATAATTTAT
97770 AAAATAAT
1 AAAATAAT
97778 ATATTTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (12 bp):
AAAATAATTTAT
Found at i:97758 original size:23 final size:23
Alignment explanation
Indices: 97731--97778 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
97721 ATTTTCAAAG
97731 TAAGAAAATAATTTATAAAATAA
1 TAAGAAAATAATTTATAAAATAA
97754 TAAGAAAATAATTTATAAAATAA
1 TAAGAAAATAATTTATAAAATAA
97777 TA
1 TA
97779 TATTTATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (23 bp):
TAAGAAAATAATTTATAAAATAA
Found at i:98007 original size:23 final size:21
Alignment explanation
Indices: 97956--98007 Score: 50
Period size: 23 Copynumber: 2.3 Consensus size: 21
97946 CACCCTTAGA
*
97956 AATAATTTAAAATAAATTTAT
1 AATAATTTAAAATAAATTAAT
*
97977 AATTTAATTTGTAAATAAATTAAGT
1 AA--TAATTT-AAAATAAATTAA-T
98002 AATAAT
1 AATAAT
98008 AAAACAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 2 0.08
23 10 0.40
24 10 0.40
25 3 0.12
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (21 bp):
AATAATTTAAAATAAATTAAT
Found at i:100402 original size:16 final size:16
Alignment explanation
Indices: 100381--100412 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
100371 TCTCCTCAAT
*
100381 AGGCACAATATGAGAC
1 AGGCACAATATAAGAC
100397 AGGCACAATATAAGAC
1 AGGCACAATATAAGAC
100413 GGGTCCAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (16 bp):
AGGCACAATATAAGAC
Found at i:108021 original size:14 final size:14
Alignment explanation
Indices: 108004--108061 Score: 57
Period size: 14 Copynumber: 4.3 Consensus size: 14
107994 AACGGTCAAC
108004 TCAATGGTCAATGA
1 TCAATGGTCAATGA
* * *
108018 TCAATGGTTAACGG
1 TCAATGGTCAATGA
108032 TCAA--GTCAATGA
1 TCAATGGTCAATGA
* *
108044 TCAACGGTCAATGG
1 TCAATGGTCAATGA
108058 TCAA
1 TCAA
108062 CTGATTGAGT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
12 9 0.26
14 26 0.74
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (14 bp):
TCAATGGTCAATGA
Found at i:108021 original size:19 final size:19
Alignment explanation
Indices: 107982--108021 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
107972 TCAACCCAAA
*
107982 AACTCAAAGGTCAACGGTC
1 AACTCAAAGGTCAACGATC
* *
108001 AACTCAATGGTCAATGATC
1 AACTCAAAGGTCAACGATC
108020 AA
1 AA
108022 TGGTTAACGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (19 bp):
AACTCAAAGGTCAACGATC
Found at i:108021 original size:26 final size:25
Alignment explanation
Indices: 107992--108054 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
107982 AACTCAAAGG
107992 TCAACGGTCAAC-TCAATGGTCAATGA
1 TCAACGGTCAACGTCAA--GTCAATGA
* *
108018 TCAATGGTTAACGGTCAAGTCAATGA
1 TCAACGGTCAAC-GTCAAGTCAATGA
108044 TCAACGGTCAA
1 TCAACGGTCAA
108055 TGGTCAACTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 27 0.87
28 4 0.13
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (25 bp):
TCAACGGTCAACGTCAAGTCAATGA
Found at i:108040 original size:19 final size:19
Alignment explanation
Indices: 108004--108054 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
107994 AACGGTCAAC
* *
108004 TCAATGGTCAATGATCAATGG
1 TCAACGGTCAA-G-TCAATGA
*
108025 TTAACGGTCAAGTCAATGA
1 TCAACGGTCAAGTCAATGA
108044 TCAACGGTCAA
1 TCAACGGTCAA
108055 TGGTCAACTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 16 0.62
20 1 0.04
21 9 0.35
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (19 bp):
TCAACGGTCAAGTCAATGA
Found at i:108041 original size:33 final size:33
Alignment explanation
Indices: 107985--108062 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 33
107975 ACCCAAAAAC
* * *
107985 TCAAAGGTCAACGGTCAACTCAATGGTCAATGA
1 TCAATGGTCAACGGTCAACTCAATGATCAACGA
* * *
108018 TCAATGGTTAACGGTCAAGTCAATGATCAACGG
1 TCAATGGTCAACGGTCAACTCAATGATCAACGA
108051 TCAATGGTCAAC
1 TCAATGGTCAAC
108063 TGATTGAGTC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (33 bp):
TCAATGGTCAACGGTCAACTCAATGATCAACGA
Found at i:108059 original size:26 final size:26
Alignment explanation
Indices: 108010--108089 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
108000 CAACTCAATG
* *
108010 GTCAATGATCAATGGTTAACGGTCAA
1 GTCAATGATCAACGGTTAATGGTCAA
*
108036 GTCAATGATCAACGGTCAATGGTCAA
1 GTCAATGATCAACGGTTAATGGTCAA
* * *
108062 CTGATTGAGTCAACGGGTTAATGGTCAA
1 GTCAATGA-TCAAC-GGTTAATGGTCAA
108090 AGTAGGTTCG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 28 0.62
27 5 0.11
28 12 0.27
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (26 bp):
GTCAATGATCAACGGTTAATGGTCAA
Found at i:108711 original size:12 final size:12
Alignment explanation
Indices: 108694--108720 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
108684 AGAGAAAAAG
108694 AAAGAAAAATTA
1 AAAGAAAAATTA
108706 AAAGAAAAATTA
1 AAAGAAAAATTA
108718 AAA
1 AAA
108721 TGGGAGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (12 bp):
AAAGAAAAATTA
Found at i:111550 original size:13 final size:13
Alignment explanation
Indices: 111532--111556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
111522 TAGGTTTGAT
111532 TTGATTATGTAAA
1 TTGATTATGTAAA
111545 TTGATTATGTAA
1 TTGATTATGTAA
111557 TCTTGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTGATTATGTAAA
Found at i:112514 original size:16 final size:18
Alignment explanation
Indices: 112493--112534 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
112483 GTATTTAGTC
112493 ATATAA-TAA-AATTTTA
1 ATATAATTAATAATTTTA
*
112509 ATATAATTAATTATTTTA
1 ATATAATTAATAATTTTA
112527 ATA-AATTA
1 ATATAATTA
112535 TTTAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 6 0.26
17 8 0.35
18 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATAATTAATAATTTTA
Found at i:112579 original size:16 final size:16
Alignment explanation
Indices: 112558--112592 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
112548 TTTTATTTTT
112558 ATAATAAATTTTAAA-A
1 ATAAT-AATTTTAAATA
112574 ATAATAATTTTAAATA
1 ATAATAATTTTAAATA
112590 ATA
1 ATA
112593 TTCTTCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATAATTTTAAATA
Found at i:112643 original size:15 final size:15
Alignment explanation
Indices: 112609--112672 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 15
112599 ACATTATTGA
112609 AAATA-TTTAA-AAT
1 AAATATTTTAATAAT
*
112622 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
112637 AAATATTTATTACATTTAT
1 AAATA-TT-TTA-A-TAAT
*
112656 AAATATATTAATAAT
1 AAATATTTTAATAAT
112671 AA
1 AA
112673 TTTTTTTGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
13 4 0.10
14 5 0.12
15 12 0.30
16 3 0.08
17 6 0.15
18 2 0.05
19 8 0.20
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:122955 original size:25 final size:25
Alignment explanation
Indices: 122915--122991 Score: 147
Period size: 25 Copynumber: 3.1 Consensus size: 25
122905 GCGTTCCTTC
122915 GTTCCCTTCGTTAAAAACAAGACAG
1 GTTCCCTTCGTTAAAAACAAGACAG
122940 GTT-CCTTCGTTAAAAACAAGACAG
1 GTTCCCTTCGTTAAAAACAAGACAG
122964 GTTCCCTTCGTTAAAAACAAGACAG
1 GTTCCCTTCGTTAAAAACAAGACAG
122989 GTT
1 GTT
122992 TCTTTTCAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
24 24 0.47
25 27 0.53
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (25 bp):
GTTCCCTTCGTTAAAAACAAGACAG
Found at i:125036 original size:6 final size:6
Alignment explanation
Indices: 125027--125080 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
125017 TCGACCTCTC
* *
125027 CTTTTT CTTTTT -TCTTT CTTTTT CCCTATTT C-TTTT CTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT --CTTTTT CTTTTT CTTTTT CTTTTT
125075 CTTTTT
1 CTTTTT
125081 TTTGGGTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 8 0.20
6 27 0.68
8 5 0.12
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:129732 original size:99 final size:98
Alignment explanation
Indices: 129595--130319 Score: 600
Period size: 99 Copynumber: 7.5 Consensus size: 98
129585 AGGGATATAG
* * * * *
129595 GATGTGGTGCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGATCTGCTTCATTGTTTTAA
1 GATGTTGTACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAA
*
129660 TCCGACCCACTACAACTCAAGGGTATGGGATTT
66 TCTGACCCACTACAACTCAAGGGTATGGGATTT
* * **
129693 GATGTTGTAACTTCTCTGCATTCCACTATAACCTCAGGGACATTGAGATCCG-TT-ACTCATTTT
1 GATGTTGT-ACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATCTGCTTCA-TTGTTTT
* * * * * * *
129756 GATCTGATCCACTACAAATTCAAGGATATAGAATCT
64 AATCTGACCCACTAC-AACTCAAGGGTATGGGATTT
* * *
129792 G--G-TG--CTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTACTTCATTGTTTTAA
1 GATGTTGTACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAA
* *
129852 TCTAACCCACTACAACTCAAGGGTACGGGATTT
66 TCTGACCCACTACAACTCAAGGGTATGGGATTT
* * * * **
129885 GATATTGTAACTTCTCTCCATTCCACTGTAACCTTAGGGACATTGAGATCCG-TT-ACTCATTTT
1 GATGTTGT-ACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATCTGCTTCA-TTGTTTT
* * * * ** * *
129948 GATC-GATCCAATGCAACTTTAGGGATATAGGATCT
64 AATCTGACCCACTACAACTCAAGGG-TATGGGATTT
* * * * *
129983 G--G-TG--GTTCACTCTATTCCACTATAACCTTAGGGACATCGAGATCTGCTTCATTGTTTTAA
1 GATGTTGTACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAA
* * *
130043 TCTAACCCACTGCAACTCAGGGGTATGGGATTT
66 TCTGACCCACTACAACTCAAGGGTATGGGATTT
* **
130076 CATGTTGTAACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATC--CATT-ACTCATTT
1 GATGTTGT-ACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATCTGC-TTCA-TTGTTT
* * * * *
130138 TGATCTGATCCACTACATCTTC-AGGGATATAGGACTT
63 TAATCTGACCCACTACAAC-TCAAGGG-TATGGGATTT
* * * ** *
130175 G--G-TG--CTTCACTGCATTCCACTGTAACCTCAGAAACATTGAGATCTTCTTCATTGTTTTAA
1 GATGTTGTACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAA
*
130235 TCTGACCCACTACAACTCAGGGGTATGGGATTT
66 TCTGACCCACTACAACTCAAGGGTATGGGATTT
* * *
130268 GATATTGTGACTTCTCTTCATTCCACTGA-AACCTCAAGGACATTGAGATCTG
1 GATGTTGT-ACTTCTCTCCATTCCACT-ATAACCTCAGGGACATTGAGATCTG
130320 TTACTCATTT
Statistics
Matches: 484, Mismatches: 106, Indels: 73
0.73 0.16 0.11
Matches are distributed among these distances:
92 36 0.07
93 116 0.24
94 59 0.12
95 6 0.01
96 10 0.02
97 20 0.04
98 67 0.14
99 170 0.35
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (98 bp):
GATGTTGTACTTCTCTCCATTCCACTATAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAA
TCTGACCCACTACAACTCAAGGGTATGGGATTT
Found at i:129873 original size:192 final size:192
Alignment explanation
Indices: 129537--130430 Score: 1274
Period size: 192 Copynumber: 4.7 Consensus size: 192
129527 ATCTTAAAAG
* * * * *
129537 GGGACACTCAGATCCGTTAGTCATTTTGATCCGATCCACTACAACTTCAGGGATATAGGATGTGG
1 GGGACATTGAGATCCGTTACTCATTTTGATCTGATCCACTACAACTTCAGGGATATAGGATCTGG
* **
129602 TGCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGATCTGCTTCATTGTTTTAATCCGACC
66 TGCTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAATCTAACC
* *
129667 CACTACAACTCAAGGGTATGGGATTTGATGTTGTAACTTCTCTGCATTCCACTATAACCTCA
131 CACTACAACTCAAGGGTATGGGATTTGATATTGTAACTTCTCTCCATTCCACTATAACCTCA
* * *
129729 GGGACATTGAGATCCGTTACTCATTTTGATCTGATCCACTACAAATTCAAGGATATAGAATCTGG
1 GGGACATTGAGATCCGTTACTCATTTTGATCTGATCCACTACAACTTCAGGGATATAGGATCTGG
*
129794 TGCTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTACTTCATTGTTTTAATCTAACC
66 TGCTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAATCTAACC
* * *
129859 CACTACAACTCAAGGGTACGGGATTTGATATTGTAACTTCTCTCCATTCCACTGTAACCTTA
131 CACTACAACTCAAGGGTATGGGATTTGATATTGTAACTTCTCTCCATTCCACTATAACCTCA
* * *
129921 GGGACATTGAGATCCGTTACTCATTTTGATC-GATCCAATGCAACTTTAGGGATATAGGATCTGG
1 GGGACATTGAGATCCGTTACTCATTTTGATCTGATCCACTACAACTTCAGGGATATAGGATCTGG
* * * * *
129985 TGGTTCACTCTATTCCACTATAACCTTAGGGACATCGAGATCTGCTTCATTGTTTTAATCTAACC
66 TGCTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAATCTAACC
* * * *
130050 CACTGCAACTCAGGGGTATGGGATTTCATGTTGTAACTTCTCTCCATTCCACTATAACCTCA
131 CACTACAACTCAAGGGTATGGGATTTGATATTGTAACTTCTCTCCATTCCACTATAACCTCA
* *
130112 GGGACATTGAGATCCATTACTCATTTTGATCTGATCCACTACATCTTCAGGGATATAGGA-CTTG
1 GGGACATTGAGATCCGTTACTCATTTTGATCTGATCCACTACAACTTCAGGGATATAGGATC-TG
* ** * *
130176 GTGCTTCACTGCATTCCACTGTAACCTCAGAAACATTGAGATCTTCTTCATTGTTTTAATCTGAC
65 GTGCTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAATCTAAC
* * *
130241 CCACTACAACTCAGGGGTATGGGATTTGATATTGTGACTTCTCTTCATTCCACTGA-AACCTCA
130 CCACTACAACTCAAGGGTATGGGATTTGATATTGTAACTTCTCTCCATTCCACT-ATAACCTCA
* * * * * * *
130304 AGGACATTGAGATCTGTTACTCATTTTGATCTGATCCATTGCAACTTCAAGAATATAGGAT-GGG
1 GGGACATTGAGATCCGTTACTCATTTTGATCTGATCCACTACAACTTCAGGGATATAGGATCTGG
* * * * *
130368 ATGCTTCACTTCATTCCACTGTAACCTCAGAGACATTGAGATTTGCTTTATTATTTTAATCTA
66 -TGCTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAATCTA
130431 CTTCATTGTA
Statistics
Matches: 625, Mismatches: 72, Indels: 10
0.88 0.10 0.01
Matches are distributed among these distances:
191 174 0.28
192 450 0.72
193 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (192 bp):
GGGACATTGAGATCCGTTACTCATTTTGATCTGATCCACTACAACTTCAGGGATATAGGATCTGG
TGCTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGCTTCATTGTTTTAATCTAACC
CACTACAACTCAAGGGTATGGGATTTGATATTGTAACTTCTCTCCATTCCACTATAACCTCA
Found at i:130275 original size:383 final size:382
Alignment explanation
Indices: 129537--130430 Score: 1324
Period size: 383 Copynumber: 2.3 Consensus size: 382
129527 ATCTTAAAAG
* * * * *
129537 GGGACACTCAGATCCGTTAGTCATTTTGATCCGATCCACTACAACTTCAGGGATATAGGATGTGG
1 GGGACATTGAGATCCGTTACTCATTTTGAT-CGATCCAATGCAACTTCAGGGATATAGGAT-TGG
* **
129602 TGCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGATCTGCTTCATTGTTTTAATCCGACC
64 TGCTTCACTCTATTCCACTGTAACCTTAGGGACATTGAGATCTGCTTCATTGTTTTAATCTAACC
* *
129667 CACTACAACTCAAGGGTATGGGATTTGATGTTGTAACTTCTCTGCATTCCACTATAACCTCAGGG
129 CACTACAACTCAAGGGTATGGGATTTCATGTTGTAACTTCTCTCCATTCCACTATAACCTCAGGG
*
129732 ACATTGAGATCCGTTACTCATTTTGATCTGATCCACTACAAATTCAAGGATATAGAATCTGGTGC
194 ACATTGAGATCCATTACTCATTTTGATCTGATCCACTACAAATTCAAGGATATAGAATCTGGTGC
**
129797 TTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTACTTCATTGTTTTAATCTAACCCAC
259 TTCACTCCATTCCACTGTAACCTCAGAAACATTGAGATCTACTTCATTGTTTTAATCTAACCCAC
* *
129862 TACAACTCAAGGGTACGGGATTTGATATTGTAACTTCTCTCCATTCCACTGTAACCTTA
324 TACAACTCAAGGGTACGGGATTTGATATTGTAACTTCTCTCCATTCCACTGAAACCTCA
*
129921 GGGACATTGAGATCCGTTACTCATTTTGATCGATCCAATGCAACTTTAGGGATATAGGATCTGGT
1 GGGACATTGAGATCCGTTACTCATTTTGATCGATCCAATGCAACTTCAGGGATATAGGAT-TGGT
* * *
129986 GGTTCACTCTATTCCACTATAACCTTAGGGACATCGAGATCTGCTTCATTGTTTTAATCTAACCC
65 GCTTCACTCTATTCCACTGTAACCTTAGGGACATTGAGATCTGCTTCATTGTTTTAATCTAACCC
* *
130051 ACTGCAACTCAGGGGTATGGGATTTCATGTTGTAACTTCTCTCCATTCCACTATAACCTCAGGGA
130 ACTACAACTCAAGGGTATGGGATTTCATGTTGTAACTTCTCTCCATTCCACTATAACCTCAGGGA
** * *
130116 CATTGAGATCCATTACTCATTTTGATCTGATCCACTACATCTTCAGGGATATAGGA-CTTGGTGC
195 CATTGAGATCCATTACTCATTTTGATCTGATCCACTACAAATTCAAGGATATAGAATC-TGGTGC
* * *
130180 TTCACTGCATTCCACTGTAACCTCAGAAACATTGAGATCTTCTTCATTGTTTTAATCTGACCCAC
259 TTCACTCCATTCCACTGTAACCTCAGAAACATTGAGATCTACTTCATTGTTTTAATCTAACCCAC
* * * *
130245 TACAACTCAGGGGTATGGGATTTGATATTGTGACTTCTCTTCATTCCACTGAAACCTCA
324 TACAACTCAAGGGTACGGGATTTGATATTGTAACTTCTCTCCATTCCACTGAAACCTCA
* * * * * *
130304 AGGACATTGAGATCTGTTACTCATTTTGATCTGATCCATTGCAACTTCAAGAATATAGGATGGGA
1 GGGACATTGAGATCCGTTACTCATTTTGATC-GATCCAATGCAACTTCAGGGATATAGGATTGG-
* * * * *
130369 TGCTTCACT-TCATTCCACTGTAACCTCAGAGACATTGAGATTTGCTTTATTATTTTAATCTA
64 TGCTTCACTCT-ATTCCACTGTAACCTTAGGGACATTGAGATCTGCTTCATTGTTTTAATCTA
130431 CTTCATTGTA
Statistics
Matches: 458, Mismatches: 48, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
382 1 0.00
383 353 0.77
384 104 0.23
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (382 bp):
GGGACATTGAGATCCGTTACTCATTTTGATCGATCCAATGCAACTTCAGGGATATAGGATTGGTG
CTTCACTCTATTCCACTGTAACCTTAGGGACATTGAGATCTGCTTCATTGTTTTAATCTAACCCA
CTACAACTCAAGGGTATGGGATTTCATGTTGTAACTTCTCTCCATTCCACTATAACCTCAGGGAC
ATTGAGATCCATTACTCATTTTGATCTGATCCACTACAAATTCAAGGATATAGAATCTGGTGCTT
CACTCCATTCCACTGTAACCTCAGAAACATTGAGATCTACTTCATTGTTTTAATCTAACCCACTA
CAACTCAAGGGTACGGGATTTGATATTGTAACTTCTCTCCATTCCACTGAAACCTCA
Found at i:130684 original size:49 final size:49
Alignment explanation
Indices: 130631--130866 Score: 185
Period size: 49 Copynumber: 4.8 Consensus size: 49
130621 TAATCTTTAG
*
130631 GGTATAAGATTCATCATTGCGACTTCAATCTTTCCCTTCACATATCTAA
1 GGTATAAGATTCATCGTTGCGACTTCAATCTTTCCCTTCACATATCTAA
* * * * * * * * * * *
130680 GGTATAAGGTTTACCGTTGTGGCTTCAACCTTTTCCTCCATATCTCTAG
1 GGTATAAGATTCATCGTTGCGACTTCAATCTTTCCCTTCACATATCTAA
* * * * *
130729 GGTATAAGATTCGTCGTTGCGGCTTCAACCTTTCCC-TC-TATATCACTAG
1 GGTATAAGATTCATCGTTGCGACTTCAATCTTTCCCTTCACATAT--CTAA
* * * * *
130778 GGTACAAGATTC-GCTATTACGACTTCAATCTATT-CCTTCACATCTCTAA
1 GGTATAAGATTCATC-GTTGCGACTTCAATCT-TTCCCTTCACATATCTAA
*
130827 GGTATAAGATTCA-CTGTTGCCACTTCAATCTTTCCCTTCA
1 GGTATAAGATTCATC-GTTGCGACTTCAATCTTTCCCTTCA
130867 TGTCTTCTAG
Statistics
Matches: 146, Mismatches: 33, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
47 4 0.03
48 4 0.03
49 131 0.90
50 4 0.03
51 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (49 bp):
GGTATAAGATTCATCGTTGCGACTTCAATCTTTCCCTTCACATATCTAA
Found at i:131520 original size:112 final size:113
Alignment explanation
Indices: 131320--131534 Score: 315
Period size: 112 Copynumber: 1.9 Consensus size: 113
131310 TCGTTAGACC
*** **
131320 ACTAACCATTATTTCAATGAAAAAAATGCTTGAACAGGATTGTAAGGTTGATAAAATTGAATTTT
1 ACTAACCATTATTTCAATGAAAAAAATGCTTGAACAGGATCACAAGGAGGATAAAATTGAATTTT
* ***
131385 ATTGGAGGCAAAGCTCGTGTGAATGAAAAGATTAAAAATCATTGGTCT
66 ATTAGAGGCAAAGCTCACATGAATGAAAAGATTAAAAATCATTGGTCT
* * *
131433 ACTAACCATTATTTCGATG-CAAAAATGCTTGAACAGGGTCACAAGGAGGATAAAATTGAATTTT
1 ACTAACCATTATTTCAATGAAAAAAATGCTTGAACAGGATCACAAGGAGGATAAAATTGAATTTT
131497 ATTAGAGGCAAAGCTCACATGAATGAAAAGATTAAAAA
66 ATTAGAGGCAAAGCTCACATGAATGAAAAGATTAAAAA
131535 CAACCCATAT
Statistics
Matches: 90, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
112 72 0.80
113 18 0.20
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (113 bp):
ACTAACCATTATTTCAATGAAAAAAATGCTTGAACAGGATCACAAGGAGGATAAAATTGAATTTT
ATTAGAGGCAAAGCTCACATGAATGAAAAGATTAAAAATCATTGGTCT
Found at i:131892 original size:12 final size:12
Alignment explanation
Indices: 131875--131901 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
131865 TCTATTCTTT
131875 TTTTTCTTTTTC
1 TTTTTCTTTTTC
131887 TTTTTCTTTTTC
1 TTTTTCTTTTTC
131899 TTT
1 TTT
131902 AGGTGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTCTTTTTC
Found at i:132590 original size:6 final size:6
Alignment explanation
Indices: 132579--132619 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
132569 TATCTCAACC
* *
132579 CTTTTT CTTTTT CTTTTG CTTTTG C-TTTT CTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
132620 TATTCTTCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.00, C:0.17, G:0.05, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:132600 original size:12 final size:11
Alignment explanation
Indices: 132581--132618 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
132571 TCTCAACCCT
132581 TTTTCTTTTTC
1 TTTTCTTTTTC
*
132592 TTTTGCTTTTGC
1 TTTT-CTTTTTC
132604 TTTTCTTTTTC
1 TTTTCTTTTTC
132615 TTTT
1 TTTT
132619 TTATTCTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.79
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:136329 original size:120 final size:120
Alignment explanation
Indices: 136193--136414 Score: 356
Period size: 120 Copynumber: 1.9 Consensus size: 120
136183 TGGAAATAAT
* *
136193 AAAATATATACATGCATAGAATAAATTAAATGAGTACAATTAAATTTGAATTAAAAATAACGGAT
1 AAAATATATACATGCATAGAATAAATTAAATGAGTACAATTAAATTTAAATTAAAAATAACGAAT
* * *
136258 CAAATAATATTAAATAAAAGA-AAGTTATTAAACAATAAGCAATAATAATATTTTA
66 CAAAGAATATTAAATAAAA-ACAAATAATTAAACAATAAGCAATAATAATATTTTA
* * *
136313 AAAATATATACATGCATAGAATAAATTAAATGAGTACAATTATATTTAAATTAAATATAATGAAT
1 AAAATATATACATGCATAGAATAAATTAAATGAGTACAATTAAATTTAAATTAAAAATAACGAAT
136378 CAAAGAATATTAAATAAAAACAAATAATTAAACAATA
66 CAAAGAATATTAAATAAAAACAAATAATTAAACAATA
136415 GACAACAATA
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
119 1 0.01
120 92 0.99
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.30
Consensus pattern (120 bp):
AAAATATATACATGCATAGAATAAATTAAATGAGTACAATTAAATTTAAATTAAAAATAACGAAT
CAAAGAATATTAAATAAAAACAAATAATTAAACAATAAGCAATAATAATATTTTA
Found at i:138645 original size:192 final size:192
Alignment explanation
Indices: 138102--138935 Score: 734
Period size: 192 Copynumber: 4.3 Consensus size: 192
138092 TGGTGTTGAA
* * * * **
138102 GCTTCTCTCCATTCCATTGTAACCTCAGGGACATTGAGATTTGCTTCTTTTTTTGTTTTAATCTG
1 GCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGA--T-C-TATTTCGTTGTTTTAATCTG
* * * *
138167 ACCCACTTCAACTTCAG-GAGTATAGGATTTGGTGTTGTAACTTCACTCCATTCCACTGTAACCT
62 ACCCACTACAAC-TCAGAG-GTATGGGATTTGATGTTGTAACTTCTCTCCATTCCACTGTAACCT
* * * *** * ** * * * * * * * * *
138231 TAGGGACGTTAAGATTTATTAC-C-TGCTTTGATC-CAGTTTATTGTAACCTCAAGAAGATAGGT
125 CAGGGACATTGAGATCCGTTACTCAT--TTTGATCTGA-TCCACTGCAACTTTAGGGATATAAGA
* **
138293 TTTGAA
187 TCTGGT
* * * * * * **
138299 GTTTCACTCCATTCTATTATAACCTCAGGGACATTGAGATCCACTTT-GTT-TCTTTAATCCAAC
1 GCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGATCTA-TTTCGTTGT-TTTAATCTGAC
* * * *
138362 CCATTACAACTCAAGGGGTATAGGATTTGATGTTGTAACTTCTCTCCATTCCACTGTAACCTCAA
64 CCACTACAACTC-AGAGGTATGGGATTTGATGTTGTAACTTCTCTCCATTCCACTGTAACCTCAG
138427 GGACATTGAG-TCCGTTACTCATTTTGATCTGATCCACTGCAACTTTAGGGATATAAGA-CATGG
128 GGACATTGAGATCCGTTACTCATTTTGATCTGATCCACTGCAACTTTAGGGATATAAGATC-TGG
138490 T
192 T
* * *
138491 GCTTCACTCCATTCCATTGTAACCTTAGTGATATTGAGATCTATTTCGTTGTTTTAATCTGACCC
1 GCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGATCTATTTCGTTGTTTTAATCTGACCC
* * * ** *
138556 ACTGCAACTCAGAGGTGTGGGATTTGATGTTGTAAATTCTCTCCATTCCACAATAACCTCCGGGA
66 ACTACAACTCAGAGGTATGGGATTTGATGTTGTAACTTCTCTCCATTCCACTGTAACCTCAGGGA
* * * * * *
138621 CACTGAGATCTGTTACTTATTTTGATCTGACCCACTGCAACTTCT-GGGATAGAGGATCTGGT
131 CATTGAGATCCGTTACTCATTTTGATCTGATCCACTGCAACTT-TAGGGATATAAGATCTGGT
* * * ** *
138683 GCCTCACTTCATTCCACTGTGACCTTAGGGACATTGAGATCTGCTTCGTTGTTTTAATCTGAGCC
1 GCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGATCTATTTCGTTGTTTTAATCTGACCC
* * *
138748 ATTACAACTCA-AGGGTATGGGATTTTATGTTGTAACTTCTCTCTATTCCACTGTAACCTCAGGG
66 ACTACAACTCAGA-GGTATGGGATTTGATGTTGTAACTTCTCTCCATTCCACTGTAACCTCAGGG
* * * * ** * *
138812 ACATTAAGATCCGTTACTCATTTTGATTTAATCCACTGCAACTTCAAAGATATAAAATCTAGT
130 ACATTGAGATCCGTTACTCATTTTGATCTGATCCACTGCAACTTTAGGGATATAAGATCTGGT
* ** * * *
138875 GCTTCGCTTTATTCCACTGTAACCTCAAGGACATTGAGATCTAATTCGTTGTTTTAATCTG
1 GCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGATCTATTTCGTTGTTTTAATCTG
138936 CTTCACTGCA
Statistics
Matches: 522, Mismatches: 100, Indels: 35
0.79 0.15 0.05
Matches are distributed among these distances:
191 57 0.11
192 345 0.66
193 78 0.15
194 6 0.01
195 1 0.00
197 35 0.07
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (192 bp):
GCTTCACTCCATTCCACTGTAACCTTAGGGACATTGAGATCTATTTCGTTGTTTTAATCTGACCC
ACTACAACTCAGAGGTATGGGATTTGATGTTGTAACTTCTCTCCATTCCACTGTAACCTCAGGGA
CATTGAGATCCGTTACTCATTTTGATCTGATCCACTGCAACTTTAGGGATATAAGATCTGGT
Found at i:138721 original size:93 final size:93
Alignment explanation
Indices: 138400--138916 Score: 280
Period size: 93 Copynumber: 5.4 Consensus size: 93
138390 GATGTTGTAA
* * * * *
138400 CTTCTCTCCATTCCACTGTAACCTCAAGGACATTGAG-TCCGTTACTCATTTTGATCTGATCCAC
1 CTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGTTACTTATTTTGATCTGACCCAC
* *
138464 TGCAACTT-TAGGGATATAAGA-CATGGTG
66 TGCAACTTCT-GGGATAGAGGATC-TGGTG
* * * * * * * *
138492 CTTCACTCCATTCCATTGTAACCTTAGTGATATTGAGATCTATTTCGTTGTTTTAATCTGACCCA
1 CTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGTTAC-TTATTTTGATCTGACCCA
* * *
138557 CTGCAAC-TCAGAGG-T-GTGGGATTTGATGTTG
65 CTGCAACTTCTG-GGATAG-AGGATCTG--G-TG
* * ** * *
138588 TAAATTCTCTCCATTCCACAATAACCTCCGGGACACTGAGATCTGTTACTTATTTTGATCTGACC
1 ---CTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGTTACTTATTTTGATCTGACC
138653 CACTGCAACTTCTGGGATAGAGGATCTGGTG
63 CACTGCAACTTCTGGGATAGAGGATCTGGTG
* * * * * * *
138684 CCTCACTTCATTCCACTGTGACCTTAGGGACATTGAGATCTGCTT-CGTTGTTTTAATCTGAGCC
1 CTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTG-TTAC-TTATTTTGATCTGACCC
* * * * *
138748 ATTACAAC-TCAAGGG-TATG-GGATTTTATGTTGTAA
64 ACTGCAACTTC-TGGGATA-GAGGA---TCTG--GT-G
* * * * * * * *
138783 CTTCTCTCTATTCCACTGTAACCTCAGGGACATTAAGATCCGTTACTCATTTTGATTTAATCCAC
1 CTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGTTACTTATTTTGATCTGACCCAC
*** * ** *
138848 TGCAACTTCAAAGATATAAAATCTAGTG
66 TGCAACTTCTGGGATAGAGGATCTGGTG
* ** *
138876 CTTCGCTTTATTCCACTGTAACCTCAAGGACATTGAGATCT
1 CTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCT
138917 AATTCGTTGT
Statistics
Matches: 314, Mismatches: 82, Indels: 57
0.69 0.18 0.13
Matches are distributed among these distances:
92 31 0.10
93 88 0.28
94 51 0.16
95 1 0.00
96 9 0.03
97 1 0.00
98 48 0.15
99 84 0.27
100 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (93 bp):
CTTCACTCCATTCCACTGTAACCTCAGGGACATTGAGATCTGTTACTTATTTTGATCTGACCCAC
TGCAACTTCTGGGATAGAGGATCTGGTG
Found at i:138813 original size:99 final size:97
Alignment explanation
Indices: 138318--138822 Score: 342
Period size: 99 Copynumber: 5.2 Consensus size: 97
138308 CATTCTATTA
** * ** * *
138318 TAACCTCAGGGACATTGAGATCCACTTTGTT-TCTTTAATCCAACCCATTACAACTCAAGGGGTA
1 TAACCTCAGGGACATTGAGAT-CTGTTCGTTAT-TTTAATCTGACCCACTGCAACTC-A-GGGTA
*
138382 TAGGATTTGATGTTGTAACTTCTCTCCATTCCACTG
62 TGGGATTTGATGTTGTAACTTCTCTCCATTCCACTG
* * * * * *
138418 TAACCTCAAGGACATTGAG-TCCGTTAC-TCATTTTGATCTGATCCACTGCAACTTTAGGGATAT
1 TAACCTCAGGGACATTGAGATCTGTT-CGTTATTTTAATCTGACCCACTGCAAC-TCAGGG-TAT
** * * * *
138481 AAGA---CATG--GT-GCTTCACTCCATTCCATTG
63 GGGATTTGATGTTGTAACTTCTCTCCATTCCACTG
* * * * * *
138510 TAACCTTAGTGATATTGAGATCTATTTCGTTGTTTTAATCTGACCCACTGCAACTCAGAGGTGTG
1 TAACCTCAGGGACATTGAGATCT-GTTCGTTATTTTAATCTGACCCACTGCAACTCAG-GGTATG
* **
138575 GGATTTGATGTTGTAAATTCTCTCCATTCCACAA
64 GGATTTGATGTTGTAACTTCTCTCCATTCCACTG
* * * *
138609 TAACCTCCGGGACACTGAGATCTGTTAC-TTATTTTGATCTGACCCACTGCAACTTCTGGG-ATA
1 TAACCTCAGGGACATTGAGATCTGTT-CGTTATTTTAATCTGACCCACTGCAAC-TCAGGGTAT-
* * * *
138672 GAGGATCTG--G-TG---CCTCACTTCATTCCACTG
63 G-GGATTTGATGTTGTAACTTCTCTCCATTCCACTG
* * * * * *
138702 TGACCTTAGGGACATTGAGATCTGCTTCGTTGTTTTAATCTGAGCCATTACAACTCAAGGGTATG
1 TAACCTCAGGGACATTGAGATCTG-TTCGTTATTTTAATCTGACCCACTGCAACTC-AGGGTATG
* *
138767 GGATTTTATGTTGTAACTTCTCTCTATTCCACTG
64 GGATTTGATGTTGTAACTTCTCTCCATTCCACTG
*
138801 TAACCTCAGGGACATTAAGATC
1 TAACCTCAGGGACATTGAGATC
138823 CGTTACTCAT
Statistics
Matches: 303, Mismatches: 74, Indels: 57
0.70 0.17 0.13
Matches are distributed among these distances:
92 31 0.10
93 52 0.17
94 51 0.17
95 6 0.02
96 7 0.02
97 5 0.02
98 56 0.18
99 77 0.25
100 18 0.06
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (97 bp):
TAACCTCAGGGACATTGAGATCTGTTCGTTATTTTAATCTGACCCACTGCAACTCAGGGTATGGG
ATTTGATGTTGTAACTTCTCTCCATTCCACTG
Found at i:139117 original size:42 final size:42
Alignment explanation
Indices: 139009--139122 Score: 135
Period size: 42 Copynumber: 2.7 Consensus size: 42
138999 TAGGGATGTA
* * * *
139009 AGATTTGTCTTTGCAGCTTCAATATAGC-CCTTTTCAGTTTTG
1 AGATTTGCCTTTGCTGCTTCAAT-TTGCTTCTTTTCAGTTTTG
*
139051 AGATTTACCTTTG-TGGCTTCAATTTGCTTCTTTAT-AGTTTTG
1 AGATTTGCCTTTGCT-GCTTCAATTTGCTTCTTT-TCAGTTTTG
139093 AGATTTGCCTTTGCTGCTTCAATTTGCTTC
1 AGATTTGCCTTTGCTGCTTCAATTTGCTTC
139123 ACCTCATCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
41 3 0.05
42 57 0.92
43 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (42 bp):
AGATTTGCCTTTGCTGCTTCAATTTGCTTCTTTTCAGTTTTG
Found at i:139161 original size:49 final size:49
Alignment explanation
Indices: 139108--139313 Score: 168
Period size: 49 Copynumber: 4.2 Consensus size: 49
139098 TGCCTTTGCT
*
139108 GCTTCAATTTGCTTCACCTCATCTTC-AGAACATAAGATTCGTCACTGCG
1 GCTTCAATCTGCTTCACCTCATCTTCAAG-ACATAAGATTCGTCACTGCG
* * *
139157 GCTTCAATCTGCTTCTCTTCATCTTCAAGATATAAGATTCGTCACTGCG
1 GCTTCAATCTGCTTCACCTCATCTTCAAGACATAAGATTCGTCACTGCG
* * * * * ** * * *
139206 GATTCAGTCTTACCCTTTACAT-ATC-T-AAGGTATAAGGTTTGTCATTGCG
1 GCTTCAATC-T--GCTTCACCTCATCTTCAAGACATAAGATTCGTCACTGCG
* * * ** *
139255 GCTTCAATCTGCTTCTCCTCATCTTCAAGATATAAGATTCATCGTTACG
1 GCTTCAATCTGCTTCACCTCATCTTCAAGACATAAGATTCGTCACTGCG
139304 GCTTCAATCT
1 GCTTCAATCT
139314 CTCCTTTCAT
Statistics
Matches: 124, Mismatches: 26, Indels: 14
0.76 0.16 0.09
Matches are distributed among these distances:
46 5 0.04
47 3 0.02
48 2 0.02
49 102 0.82
50 4 0.03
51 3 0.02
52 5 0.04
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (49 bp):
GCTTCAATCTGCTTCACCTCATCTTCAAGACATAAGATTCGTCACTGCG
Found at i:139279 original size:98 final size:98
Alignment explanation
Indices: 139139--139346 Score: 276
Period size: 98 Copynumber: 2.1 Consensus size: 98
139129 TCTTCAGAAC
* * * * *
139139 ATAAGATTCGTCACTGCGGCTTCAATCTGCTTCTCTTCATCTTCAAGATATAAGATTCGTCACTG
1 ATAAGGTTTGTCACTGCGGCTTCAATCTGCTTCTCCTCATCTTCAAGATATAAGATTCATCACTA
*
139204 CGGATTCAGTCT-TACCCTTT-ACATATCTAAGGT
66 CGGATTCAATCTCT--CCTTTCACATATCTAAGGT
* **
139237 ATAAGGTTTGTCATTGCGGCTTCAATCTGCTTCTCCTCATCTTCAAGATATAAGATTCATCGTTA
1 ATAAGGTTTGTCACTGCGGCTTCAATCTGCTTCTCCTCATCTTCAAGATATAAGATTCATCACTA
* *
139302 CGGCTTCAATCTCTCCTTTCATATATCTAAGGT
66 CGGATTCAATCTCTCCTTTCACATATCTAAGGT
*
139335 GTAAGGTTTGTC
1 ATAAGGTTTGTC
139347 GTTGTAGCTT
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
97 5 0.05
98 90 0.94
99 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (98 bp):
ATAAGGTTTGTCACTGCGGCTTCAATCTGCTTCTCCTCATCTTCAAGATATAAGATTCATCACTA
CGGATTCAATCTCTCCTTTCACATATCTAAGGT
Found at i:139349 original size:49 final size:51
Alignment explanation
Indices: 139226--139349 Score: 130
Period size: 49 Copynumber: 2.5 Consensus size: 51
139216 TACCCTTTAC
* * *
139226 ATATCTAAGGTATAAGGTTTGTCATTGCGGCTTCAATCTGCTTCTCCTCAT
1 ATATCTAAGGTATAAGGTTTGTCGTTACGGCTTCAATCTGCTCCTCCTCAT
* * * ** *
139277 CT-TC-AAGATATAAGATTCATCGTTACGGCTTCAATCT-CTCCT-TTCAT
1 ATATCTAAGGTATAAGGTTTGTCGTTACGGCTTCAATCTGCTCCTCCTCAT
*
139324 ATATCTAAGGTGTAAGGTTTGTCGTT
1 ATATCTAAGGTATAAGGTTTGTCGTT
139350 GTAGCTTTAA
Statistics
Matches: 56, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
47 5 0.09
48 6 0.11
49 42 0.75
50 2 0.04
51 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (51 bp):
ATATCTAAGGTATAAGGTTTGTCGTTACGGCTTCAATCTGCTCCTCCTCAT
Found at i:139376 original size:98 final size:98
Alignment explanation
Indices: 139183--139533 Score: 298
Period size: 98 Copynumber: 3.6 Consensus size: 98
139173 CTTCATCTTC
* * * * * * *
139183 AAGATATAAGATTCGTCACTGCGGATTCAGTCTTACCCTTT-ACATATCTAAGGTATAAGGTTTG
1 AAGATATAAGATTCATCATTACGGCTTCAATCTT-TCCTTTCATATATCTAAGGTATAAGGTTTG
*
139247 TCATTGCGGCTTCAATCTGCTT--CTCCTCATCT-T
65 TCATTGCGGCTTCAATCT--TTCCCTCCACATCTCT
* * *
139280 CAAGATATAAGATTCATCGTTACGGCTTCAATCTCTCCTTTCATATATCTAAGGTGTAAGGTTTG
1 -AAGATATAAGATTCATCATTACGGCTTCAATCTTTCCTTTCATATATCTAAGGTATAAGGTTTG
* ** * *
139345 TCGTTGTAGCTTTAACCTTTCCCTCCACATCTCT
65 TCATTGCGGCTTCAATCTTTCCCTCCACATCTCT
* * * * * * * * * * * ** *
139379 AGGATATAAGGTTCACCGTTGCGACTTCAACCTTTCC-TCCATATCTCTAGGGTACAAAATTTGC
1 AAGATATAAGATTCATCATTACGGCTTCAATCTTTCCTTTCATATATCTAAGGTATAAGGTTTGT
*
139443 CATTGCGGCTTCAATCTTTCCCTTCACATCTCT
66 CATTGCGGCTTCAATCTTTCCCTCCACATCTCT
* * * * *
139476 AAGGTATAATATTCATCATTACGGCTTCAATCTTTCCCTTCATGTCTTCTAAGGTATA
1 AAGATATAAGATTCATCATTACGGCTTCAATCTTTCCTTTCATAT-ATCTAAGGTATA
139534 TGATTCAATG
Statistics
Matches: 196, Mismatches: 51, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
96 2 0.01
97 79 0.40
98 105 0.54
99 10 0.05
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (98 bp):
AAGATATAAGATTCATCATTACGGCTTCAATCTTTCCTTTCATATATCTAAGGTATAAGGTTTGT
CATTGCGGCTTCAATCTTTCCCTCCACATCTCT
Found at i:140537 original size:20 final size:19
Alignment explanation
Indices: 140514--140556 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
140504 TTTTCTTTCA
140514 TTTTCCCTTTTTCTTTTCTT
1 TTTTCCCTTTTTCTTTT-TT
**
140534 TTTTTTCTTTTTCTTTTTT
1 TTTTCCCTTTTTCTTTTTT
140553 TTTT
1 TTTT
140557 GGGTGAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTCCCTTTTTCTTTTTT
Found at i:140538 original size:14 final size:15
Alignment explanation
Indices: 140521--140554 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
140511 TCATTTTCCC
140521 TTTTTC-TTTTCTTT
1 TTTTTCTTTTTCTTT
140535 TTTTTCTTTTTCTTT
1 TTTTTCTTTTTCTTT
140550 TTTTT
1 TTTTT
140555 TTGGGTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTCTTTTTCTTT
Found at i:142671 original size:26 final size:25
Alignment explanation
Indices: 142623--142672 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
142613 AAAAAAAATA
* *
142623 GAAATAAAAGGGGAAAAGTTTAAAG
1 GAAATAAAAAGGGAAAAGATTAAAG
*
142648 GAAATAAAAAGGTAAAATGATTAAA
1 GAAATAAAAAGGGAAAA-GATTAAA
142673 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.60, C:0.00, G:0.22, T:0.18
Consensus pattern (25 bp):
GAAATAAAAAGGGAAAAGATTAAAG
Found at i:147295 original size:21 final size:21
Alignment explanation
Indices: 147258--147298 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
147248 TTTTTAGTAT
*
147258 CGGTAGAGGTAAGACTTGTAC
1 CGGTAGAGGTAACACTTGTAC
147279 CGGTAGAGG-AATCACTTGTA
1 CGGTAGAGGTAA-CACTTGTA
147299 TCGATACAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (21 bp):
CGGTAGAGGTAACACTTGTAC
Found at i:149598 original size:404 final size:402
Alignment explanation
Indices: 148800--149607 Score: 1472
Period size: 404 Copynumber: 2.0 Consensus size: 402
148790 GAGGTACTGA
*
148800 TCACTTCATGCAAAATTACCTGATGAATTCTGAAGCAAAGGAAGATCAGTGTTAATCCTCCAGTT
1 TCACTTCATGCAAAATTACCTGATGAATTCTGAAGCAAAGGAAGATCAGTGTTAATCCTCCAATT
*
148865 ACACCACAGAAAGGCAGACACCCAGGGCAGAATAGTAGTGCAGGTGGGAATCAAAATGAAAATAA
66 ACACCACAGAAAGGCAGACACCCAGGGCAGAATAGCAGTGCAGGTGGGAATCAAAATGAAAATAA
148930 AGATAATGTAAGTAGATCGGAAGCTTGAGCACCTGAACGGACTTATGCCATCCGAGCTAAAGAAG
131 AGATAATGTAAGTAGATCGGAAGCTTGAGCACCTGAACGGACTTATGCCATCCGAGCTAAAGAAG
*
148995 AGGTTGCCGCTCTCGATGTTGTAACTGGTATATTCTATCTTTTTAATGATATTGTGTGTGCTTGG
196 AGGTTACCGCTCTCGATGTTGTAACTGGTATATTCTATCTTTTTAATGATATTGTGTGTGCTTGG
*
149060 ATTGAACCGGGATCGACTCATTCATATATTTGCACTACCTTAGCTACTGATAAGAAATTGTTTGT
261 ATTGAACCGGGATCGACTCATTCATATATTTGCACTACCTTAGCTACTGATAAGAAATTGTTTAT
* *
149125 TGTGTCGACTGAATTTGATGGCAAGTCACAAGCCTATTGGGTCATAGTGTCATTGTTAACCTAGT
326 TGAGTCGACTGAATTTGATGGCAAGTCACAAACCTATTGGGTCATAGTGTCATTGTTAACCTAGT
149190 ATGTCGTAAATG
391 ATGTCGTAAATG
*
149202 TCACTTCATGCAAAATTACCTGATGAATTCTGAAGCAAAGGAAGATCGTAGTGTTAATCCTCTAA
1 TCACTTCATGCAAAATTACCTGATGAATTCTGAAGCAAAGGAAGATC--AGTGTTAATCCTCCAA
* *
149267 TTACACCACAGAAAGGTAGACACCCAGGGTAGAATAGCAGTGCAGGTGGGAATCAAAATGAAAAT
64 TTACACCACAGAAAGGCAGACACCCAGGGCAGAATAGCAGTGCAGGTGGGAATCAAAATGAAAAT
*
149332 AAAGATAATGTAAGTAGATCGGAAGCTTGAGCACCTGAACGGACTTATGCCATCCGAGCTAGAGA
129 AAAGATAATGTAAGTAGATCGGAAGCTTGAGCACCTGAACGGACTTATGCCATCCGAGCTAAAGA
149397 AGAGGTTACCGCTCTCGATGTTGTAACTGGTATATTCTATCTTTTTAATGATATTGTGTGTGCTT
194 AGAGGTTACCGCTCTCGATGTTGTAACTGGTATATTCTATCTTTTTAATGATATTGTGTGTGCTT
* * *
149462 GGATTGAACCGGGATCGACTCATTCATATTTTTGCACTGCCTTAGCTAGTGATAAGAAATTGTTT
259 GGATTGAACCGGGATCGACTCATTCATATATTTGCACTACCTTAGCTACTGATAAGAAATTGTTT
*
149527 ATTGAGTCGACTGAATTTGATGGCAAGTCACAAACCTATTGGGTCATAGTGTCATTGTTAACCTG
324 ATTGAGTCGACTGAATTTGATGGCAAGTCACAAACCTATTGGGTCATAGTGTCATTGTTAACCTA
149592 GTATGTCGTAAATG
389 GTATGTCGTAAATG
149606 TC
1 TC
149608 CACTGATACT
Statistics
Matches: 390, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
402 47 0.12
404 343 0.88
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (402 bp):
TCACTTCATGCAAAATTACCTGATGAATTCTGAAGCAAAGGAAGATCAGTGTTAATCCTCCAATT
ACACCACAGAAAGGCAGACACCCAGGGCAGAATAGCAGTGCAGGTGGGAATCAAAATGAAAATAA
AGATAATGTAAGTAGATCGGAAGCTTGAGCACCTGAACGGACTTATGCCATCCGAGCTAAAGAAG
AGGTTACCGCTCTCGATGTTGTAACTGGTATATTCTATCTTTTTAATGATATTGTGTGTGCTTGG
ATTGAACCGGGATCGACTCATTCATATATTTGCACTACCTTAGCTACTGATAAGAAATTGTTTAT
TGAGTCGACTGAATTTGATGGCAAGTCACAAACCTATTGGGTCATAGTGTCATTGTTAACCTAGT
ATGTCGTAAATG
Found at i:154966 original size:21 final size:21
Alignment explanation
Indices: 154940--154994 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
154930 TAGAGGTAAG
*
154940 ACTTGTATCGGTAGAGGAGTC
1 ACTTGTATCGGTAGAAGAGTC
* **
154961 ATTTGTATCGGTAGAATTGTC
1 ACTTGTATCGGTAGAAGAGTC
154982 ACTTGTATCGGTA
1 ACTTGTATCGGTA
154995 CAAACCTGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (21 bp):
ACTTGTATCGGTAGAAGAGTC
Found at i:157137 original size:23 final size:23
Alignment explanation
Indices: 157092--157140 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
157082 ATCTCAATAT
*
157092 TCACAAATTTATCAATTAAACAA
1 TCACAAATTTATCAATAAAACAA
*
157115 TCACAAATTTAT-AGTAAATACAA
1 TCACAAATTTATCAATAAA-ACAA
157138 TCA
1 TCA
157141 ACCTATATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.31
Consensus pattern (23 bp):
TCACAAATTTATCAATAAAACAA
Found at i:157856 original size:2 final size:2
Alignment explanation
Indices: 157851--157876 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
157841 ACACACACAC
157851 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
157877 GAGTTGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:168550 original size:37 final size:37
Alignment explanation
Indices: 168509--168667 Score: 232
Period size: 37 Copynumber: 4.4 Consensus size: 37
168499 GACTTCATGC
168509 CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGT
1 CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGT
168546 CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGT
1 CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGT
* *
168583 CAGTGTATTCAAGCTGTGTGCCTAGTAGGCTTTGTGT
1 CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGT
* ** * *
168620 CGGTGTATTCGGGCTATGTGCCTAGCAGGCTTTGTG-
1 CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGT
*
168656 CGGTG-ATTCAAG
1 CAGTGTATTCAAG
168668 AACAAGTATT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
35 5 0.04
36 5 0.04
37 103 0.91
ACGTcount: A:0.17, C:0.18, G:0.30, T:0.35
Consensus pattern (37 bp):
CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGT
Found at i:168559 original size:21 final size:21
Alignment explanation
Indices: 168534--168602 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
168524 GTGTGCCTAG
168534 CAAGCTTTGTGTCAGTGTATT
1 CAAGCTTTGTGTCAGTGTATT
** *
168555 CAAGC--TGTGT--GCCTA-G
1 CAAGCTTTGTGTCAGTGTATT
168571 CAAGCTTTGTGTCAGTGTATT
1 CAAGCTTTGTGTCAGTGTATT
*
168592 CAAGCTGTGTG
1 CAAGCTTTGTG
168603 CCTAGTAGGC
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
16 5 0.14
17 3 0.08
18 5 0.14
19 5 0.14
20 3 0.08
21 15 0.42
ACGTcount: A:0.19, C:0.17, G:0.28, T:0.36
Consensus pattern (21 bp):
CAAGCTTTGTGTCAGTGTATT
Found at i:168615 original size:74 final size:73
Alignment explanation
Indices: 168484--168667 Score: 237
Period size: 74 Copynumber: 2.5 Consensus size: 73
168474 AAAAATTTAG
**
168484 GCTATGTGCCTAGC-AGACTTCATGCCAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGTCA
1 GCTATGTGCCTAGCAAG-CTTTGTG-CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGTCA
168548 GTGTATTCAA
64 GTGTATTCAA
* * * *
168558 GCTGTGTGCCTAGCAAGCTTTGTGTCAGTGTATTCAAGCTGTGTGCCTAGTAGGCTTTGTGTCGG
1 GCTATGTGCCTAGCAAGCTTTGTG-CAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGTCAG
**
168623 TGTATTCGG
65 TGTATTCAA
* *
168632 GCTATGTGCCTAGCAGGCTTTGTGCGGTG-ATTCAAG
1 GCTATGTGCCTAGCAAGCTTTGTGCAGTGTATTCAAG
168668 AACAAGTATT
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
72 7 0.07
73 4 0.04
74 84 0.87
75 2 0.02
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.34
Consensus pattern (73 bp):
GCTATGTGCCTAGCAAGCTTTGTGCAGTGTATTCAAGCTGTGTGCCTAGCAAGCTTTGTGTCAGT
GTATTCAA
Found at i:171245 original size:19 final size:19
Alignment explanation
Indices: 171221--171260 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
171211 GTGGCAGAAG
171221 ATGAAGTACGAGTAATATT
1 ATGAAGTACGAGTAATATT
171240 ATGAAGTACGAGTAATATT
1 ATGAAGTACGAGTAATATT
171259 AT
1 AT
171261 ATCAGTGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (19 bp):
ATGAAGTACGAGTAATATT
Found at i:172923 original size:29 final size:29
Alignment explanation
Indices: 172889--172982 Score: 99
Period size: 29 Copynumber: 3.3 Consensus size: 29
172879 TAATTGTTAT
172889 TAATTTAAAATAGGACTTAGGTAATTTAA
1 TAATTTAAAATAGGACTTAGGTAATTTAA
* * *
172918 TAATTT-AAAT----TTTATGTTAATTGTTAT
1 TAATTTAAAATAGGACTTA-GGTAA-T-TTAA
172945 TAATTTAAAATAGGACTTAGGTAATTTAA
1 TAATTTAAAATAGGACTTAGGTAATTTAA
172974 TAATTTAAA
1 TAATTTAAA
172983 TTATATGTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
24 3 0.06
25 4 0.08
26 1 0.02
27 9 0.18
28 8 0.16
29 18 0.35
30 1 0.02
31 4 0.08
32 3 0.06
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.45
Consensus pattern (29 bp):
TAATTTAAAATAGGACTTAGGTAATTTAA
Found at i:172936 original size:56 final size:56
Alignment explanation
Indices: 172871--172990 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
172861 ATTAATATAT
172871 TTTTATGTTAATTGTTATTAATTTAAAATAGGACTTAGGTAATTTAATAATTTAAA
1 TTTTATGTTAATTGTTATTAATTTAAAATAGGACTTAGGTAATTTAATAATTTAAA
172927 TTTTATGTTAATTGTTATTAATTTAAAATAGGACTTAGGTAATTTAATAATTTAAA
1 TTTTATGTTAATTGTTATTAATTTAAAATAGGACTTAGGTAATTTAATAATTTAAA
*
172983 TTATATGT
1 TTTTATGT
172991 GAGTTTGAAT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (56 bp):
TTTTATGTTAATTGTTATTAATTTAAAATAGGACTTAGGTAATTTAATAATTTAAA
Found at i:173193 original size:53 final size:53
Alignment explanation
Indices: 173113--173219 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
173103 AAGTCGTCGG
173113 AGGTCATCGAGCATCATCAGACGTTGTCCTTGCCTCTAGCCGCAAGTTGCCGC
1 AGGTCATCGAGCATCATCAGACGTTGTCCTTGCCTCTAGCCGCAAGTTGCCGC
173166 AGGTCATCGAGCATCATCAGACGTTGTCCTTGCCTCTAGCCGCAAGTTGCCGC
1 AGGTCATCGAGCATCATCAGACGTTGTCCTTGCCTCTAGCCGCAAGTTGCCGC
173219 A
1 A
173220 AGTTCCCACA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (53 bp):
AGGTCATCGAGCATCATCAGACGTTGTCCTTGCCTCTAGCCGCAAGTTGCCGC
Found at i:177935 original size:13 final size:13
Alignment explanation
Indices: 177903--177942 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
177893 TATCTTTAAC
*
177903 TTAGATTAATTTAGT
1 TTAGATTAA--TATT
177918 TTAGATTAATATT
1 TTAGATTAATATT
177931 TTAGATTAATAT
1 TTAGATTAATAT
177943 CCTTCACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 15 0.62
15 9 0.38
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TTAGATTAATATT
Found at i:183312 original size:28 final size:29
Alignment explanation
Indices: 183281--183371 Score: 89
Period size: 28 Copynumber: 3.2 Consensus size: 29
183271 TAAGCTCTGA
183281 AAAGGTA-AGCCTTTGTGGCGAACCTCTC
1 AAAGGTACAGCCTTTGTGGCGAACCTCTC
* * *
183309 AAAGG-ACAGCCTCTGTGGC-AAACTCTGG
1 AAAGGTACAGCCTTTGTGGCGAACCTCT-C
* * *
183337 AAAGGTAAGAGACTTTATGGCGAACCTCTC
1 AAAGGT-ACAGCCTTTGTGGCGAACCTCTC
183367 AAAGG
1 AAAGG
183372 ATAGCCTCTA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
27 7 0.14
28 21 0.43
30 15 0.31
31 6 0.12
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (29 bp):
AAAGGTACAGCCTTTGTGGCGAACCTCTC
Found at i:183392 original size:58 final size:58
Alignment explanation
Indices: 183260--183404 Score: 161
Period size: 58 Copynumber: 2.5 Consensus size: 58
183250 CATCAACAAA
* * * * * *
183260 AGCCTATATGGTAAGCTCTGAAAAGGT-A-AGCCTTTGTGGCGAACCTCTCAAAGGAC
1 AGCCTCTATGGAAAACTCTGGAAAGGTAAGAGACTTTATGGCGAACCTCTCAAAGGAC
* * *
183316 AGCCTCTGTGGCAAACTCTGGAAAGGTAAGAGACTTTATGGCGAACCTCTCAAAGGAT
1 AGCCTCTATGGAAAACTCTGGAAAGGTAAGAGACTTTATGGCGAACCTCTCAAAGGAC
* *
183374 AGCCTCTAT-GAAAGACTCTAGAATGGTAAGA
1 AGCCTCTATGGAAA-ACTCTGGAAAGGTAAGA
183405 CTTTCTAGCT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
56 22 0.30
57 4 0.05
58 48 0.65
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (58 bp):
AGCCTCTATGGAAAACTCTGGAAAGGTAAGAGACTTTATGGCGAACCTCTCAAAGGAC
Found at i:191514 original size:38 final size:38
Alignment explanation
Indices: 191463--191546 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
191453 ATTAGTCTAT
*
191463 CAAAATTACGCCCAAAATTGTCACTGCATGAAGATGTC
1 CAAAATTACGCCCAAAATTGTCACTACATGAAGATGTC
* * *
191501 CAGAATTAGGCCCAAAATTGTCACTACATGATGATGTC
1 CAAAATTACGCCCAAAATTGTCACTACATGAAGATGTC
191539 CAAAATTA
1 CAAAATTA
191547 TCACTTATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (38 bp):
CAAAATTACGCCCAAAATTGTCACTACATGAAGATGTC
Found at i:193989 original size:17 final size:17
Alignment explanation
Indices: 193964--193997 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
193954 TGTTAGTAAG
193964 CATTATCGTTGCATTTT
1 CATTATCGTTGCATTTT
*
193981 CATTGTCGTTGCATTTT
1 CATTATCGTTGCATTTT
193998 AGTGTTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.53
Consensus pattern (17 bp):
CATTATCGTTGCATTTT
Found at i:195043 original size:38 final size:38
Alignment explanation
Indices: 195001--195084 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 38
194991 TGGGTCTATT
* * * *
195001 CAGAATTGCGCCCAAAATTGTCACTGCTTGA-CGTTGTC
1 CAGAATTGCACCCAAAATTATCACTGCATGAGCATTG-C
195039 CAGAATTGCACCCAAAATTATCACTGCATGAGCATTGC
1 CAGAATTGCACCCAAAATTATCACTGCATGAGCATTGC
195077 CAGAATTG
1 CAGAATTG
195085 TCACTGTAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 37 0.90
39 4 0.10
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (38 bp):
CAGAATTGCACCCAAAATTATCACTGCATGAGCATTGC
Found at i:200311 original size:28 final size:28
Alignment explanation
Indices: 200270--200323 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
200260 GATATCCAAT
*
200270 TTACTCCATGTTGACCCAAAGGTCATGC
1 TTACTCCATATTGACCCAAAGGTCATGC
*
200298 TTACTCCCTATTGACCCAAAGGTCAT
1 TTACTCCATATTGACCCAAAGGTCAT
200324 ACCTGCTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (28 bp):
TTACTCCATATTGACCCAAAGGTCATGC
Found at i:204485 original size:18 final size:19
Alignment explanation
Indices: 204457--204493 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
204447 ATATAGTATT
*
204457 TTAATAAATTAGAAATTAA
1 TTAATAAATTAAAAATTAA
204476 TTAA-AAATTAAAAATTAA
1 TTAATAAATTAAAAATTAA
204494 AAAATCCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
TTAATAAATTAAAAATTAA
Found at i:205970 original size:54 final size:54
Alignment explanation
Indices: 205907--206014 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
205897 GTTTATAAAG
205907 AAAATTTACTTTCCCACTAAAAGTAAACAAATTGTTTTTATTTTATGATTTGGT
1 AAAATTTACTTTCCCACTAAAAGTAAACAAATTGTTTTTATTTTATGATTTGGT
205961 AAAATTTACTTTCCCACTAAAAGTAAACAAATTGTTTTTATTTTATGATTTGGT
1 AAAATTTACTTTCCCACTAAAAGTAAACAAATTGTTTTTATTTTATGATTTGGT
206015 TTGTGTTGTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.44
Consensus pattern (54 bp):
AAAATTTACTTTCCCACTAAAAGTAAACAAATTGTTTTTATTTTATGATTTGGT
Found at i:218023 original size:28 final size:28
Alignment explanation
Indices: 217979--218178 Score: 72
Period size: 28 Copynumber: 7.1 Consensus size: 28
217969 AAAACCTCTA
*
217979 TGGCAAGCTCTAG-AAAGGTAAGCCTTTG
1 TGGCAAACTCT-GCAAAGGTAAGCCTTTG
* * * *
218007 TGGCGAACCTCT-CAAAGG-ACAACATTTA
1 TGGC-AAACTCTGCAAAGGTA-AGCCTTTG
*
218035 TGGCAAACTCTGGAAAGGTAAGCCTTTG
1 TGGCAAACTCTGCAAAGGTAAGCCTTTG
* * ** * * *
218063 TGACAAA-TGTATAAAAGG-ACAACCTCTA
1 TGGCAAACTCT-GCAAAGGTA-AGCCTTTG
* * *
218091 TGGAAAACTCTGGAAAGGTAAGCCTTTT
1 TGGCAAACTCTGCAAAGGTAAGCCTTTG
* * * * *
218119 TGGCGAAC-CTTTCAAAGG-ACAACCTCTA
1 TGGCAAACTC-TGCAAAGGTA-AGCCTTTG
* * *
218147 TGTCAAACTCTGGAAAGGTAAGCCTTTA
1 TGGCAAACTCTGCAAAGGTAAGCCTTTG
218175 TGGC
1 TGGC
218179 GAACCTTTCA
Statistics
Matches: 121, Mismatches: 38, Indels: 26
0.65 0.21 0.14
Matches are distributed among these distances:
27 12 0.10
28 97 0.80
29 12 0.10
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (28 bp):
TGGCAAACTCTGCAAAGGTAAGCCTTTG
Found at i:218191 original size:28 final size:28
Alignment explanation
Indices: 218104--218192 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
218094 AAAACTCTGG
*
218104 AAAGGTAAGCCTTTTTGGCGAACCTTTC
1 AAAGGTAAGCCTTTATGGCGAACCTTTC
* * * * **
218132 AAAGG-ACAACCTCTATGTC-AAACTCTGG
1 AAAGGTA-AGCCTTTATGGCGAACCT-TTC
218160 AAAGGTAAGCCTTTATGGCGAACCTTTC
1 AAAGGTAAGCCTTTATGGCGAACCTTTC
218188 AAAGG
1 AAAGG
218193 ACAACCTCTA
Statistics
Matches: 44, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
27 5 0.11
28 34 0.77
29 5 0.11
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (28 bp):
AAAGGTAAGCCTTTATGGCGAACCTTTC
Found at i:218204 original size:28 final size:28
Alignment explanation
Indices: 218119--218204 Score: 86
Period size: 28 Copynumber: 3.1 Consensus size: 28
218109 TAAGCCTTTT
218119 TGGCGAACCTTTCAAAGGACAACCTCTA
1 TGGCGAACCTTTCAAAGGACAACCTCTA
* * ** * *
218147 TGTC-AAACTCTGGAAAGGTA-AGCCTTTA
1 TGGCGAACCT-TTCAAAGG-ACAACCTCTA
218175 TGGCGAACCTTTCAAAGGACAACCTCTA
1 TGGCGAACCTTTCAAAGGACAACCTCTA
218203 TG
1 TG
218205 TCAAACTTTG
Statistics
Matches: 42, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
27 5 0.12
28 32 0.76
29 5 0.12
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (28 bp):
TGGCGAACCTTTCAAAGGACAACCTCTA
Found at i:218219 original size:28 final size:28
Alignment explanation
Indices: 218132--218222 Score: 96
Period size: 28 Copynumber: 3.2 Consensus size: 28
218122 CGAACCTTTC
*
218132 AAAGGACAACCTCTATGTCAAACTCTGG
1 AAAGGACAACCTCTATGTCAAACTTTGG
* * * * *
218160 AAAGGTA-AGCCTTTATGGCGAACCTTT-C
1 AAAGG-ACAACCTCTATGTC-AAACTTTGG
218188 AAAGGACAACCTCTATGTCAAACTTTGG
1 AAAGGACAACCTCTATGTCAAACTTTGG
218216 AAAGGAC
1 AAAGGAC
218223 GCCTTTGTGG
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
27 7 0.15
28 35 0.73
29 6 0.12
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (28 bp):
AAAGGACAACCTCTATGTCAAACTTTGG
Found at i:218241 original size:56 final size:56
Alignment explanation
Indices: 217971--218233 Score: 357
Period size: 56 Copynumber: 4.7 Consensus size: 56
217961 CAGCAAGAAA
* * *
217971 AACCTCTATGGCAAGCTCTAGAAAGGTAAGCCTTTGTGGCGAACCTCTCAAAGGAC
1 AACCTCTATGGCAAACTCTGGAAAGGTAAGCCTTTGTGGCGAACCTTTCAAAGGAC
* * * * ** * *
218027 AACATTTATGGCAAACTCTGGAAAGGTAAGCCTTTGTGACAAATGTATAAAAGGAC
1 AACCTCTATGGCAAACTCTGGAAAGGTAAGCCTTTGTGGCGAACCTTTCAAAGGAC
* *
218083 AACCTCTATGGAAAACTCTGGAAAGGTAAGCCTTTTTGGCGAACCTTTCAAAGGAC
1 AACCTCTATGGCAAACTCTGGAAAGGTAAGCCTTTGTGGCGAACCTTTCAAAGGAC
* *
218139 AACCTCTATGTCAAACTCTGGAAAGGTAAGCCTTTATGGCGAACCTTTCAAAGGAC
1 AACCTCTATGGCAAACTCTGGAAAGGTAAGCCTTTGTGGCGAACCTTTCAAAGGAC
* * *
218195 AACCTCTATGTCAAACTTTGGAAAGG-ACGCCTTTGTGGC
1 AACCTCTATGGCAAACTCTGGAAAGGTAAGCCTTTGTGGC
218234 AAAACCTTGG
Statistics
Matches: 181, Mismatches: 26, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
55 11 0.06
56 170 0.94
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (56 bp):
AACCTCTATGGCAAACTCTGGAAAGGTAAGCCTTTGTGGCGAACCTTTCAAAGGAC
Found at i:221343 original size:20 final size:20
Alignment explanation
Indices: 221293--221349 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
221283 TACTTTAGCC
**
221293 ATTTTT-TATTTTTGTTTTA
1 ATTTTTCTATTTTTAATTTA
*
221312 ATATTTGC-ATTTTTAATTTA
1 AT-TTTTCTATTTTTAATTTA
221332 ATTTTTCTA-TTTTAATTT
1 ATTTTTCTATTTTTAATTT
221350 TTCCTTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (20 bp):
ATTTTTCTATTTTTAATTTA
Found at i:225158 original size:3 final size:3
Alignment explanation
Indices: 225152--225238 Score: 76
Period size: 3 Copynumber: 29.3 Consensus size: 3
225142 TTTTCTTTTT
* *
225152 TTA TTA TTA TT- TTA TCA TTA -TA TTTA TTTA TT- TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA
*
225196 TTA TTA TTA TTA -TA TTTA TTA TTA CTA CTT- TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA -TTA TTA TTA TTA TTA T
225239 ATTTTGTTTA
Statistics
Matches: 70, Mismatches: 6, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
2 10 0.14
3 51 0.73
4 9 0.13
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:225198 original size:27 final size:27
Alignment explanation
Indices: 225151--225243 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 27
225141 TTTTTCTTTT
225151 TTTATTATTATT-TTA-TCATTA-TATTTA
1 TTTATT-TTATTATTACT-ATTATTA-TTA
225178 TTTATTTTATTATTACTATTATTATTA
1 TTTATTTTATTATTACTATTATTATTA
225205 -TTATATTTATTATTACTACTTTTATTATTA
1 TTTAT-TTTATTATTACTA---TTATTATTA
225235 TTATATTTT
1 TT-TATTTT
225244 GTTTATGTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 14
0.80 0.00 0.20
Matches are distributed among these distances:
26 9 0.16
27 29 0.51
28 3 0.05
30 9 0.16
31 4 0.07
32 3 0.05
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTATTTTATTATTACTATTATTATTA
Found at i:225218 original size:30 final size:30
Alignment explanation
Indices: 225151--225242 Score: 109
Period size: 30 Copynumber: 3.1 Consensus size: 30
225141 TTTTTCTTTT
* *
225151 TTTATTATTATT-TTATCATTA-TATT-TA
1 TTTATTATTATTACTATTATTATTATTATA
225178 TTTATTTTATTATTACTATTATTATTATTATA
1 TTTA--TTATTATTACTATTATTATTATTATA
* *
225210 TTTATTATTACTACTTTTATTATTATTATA
1 TTTATTATTATTACTATTATTATTATTATA
225240 TTT
1 TTT
225243 TGTTTATGTT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
27 4 0.07
29 8 0.14
30 34 0.61
31 4 0.07
32 6 0.11
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.66
Consensus pattern (30 bp):
TTTATTATTATTACTATTATTATTATTATA
Found at i:226818 original size:23 final size:22
Alignment explanation
Indices: 226779--226822 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
226769 AAAATATTTC
*
226779 ATTAATTAATTTAGGTTGAATTA
1 ATTAATTAAATTAGGTT-AATTA
*
226802 ATTAATTAAATTGGGTTAATT
1 ATTAATTAAATTAGGTTAATT
226823 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.48
Consensus pattern (22 bp):
ATTAATTAAATTAGGTTAATTA
Found at i:237047 original size:20 final size:20
Alignment explanation
Indices: 237022--237061 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
237012 AATTACTTGT
237022 TAATAAAGAAGATCTATGAA
1 TAATAAAGAAGATCTATGAA
237042 TAATAAAGAAGATCTATGAA
1 TAATAAAGAAGATCTATGAA
237062 CATGAAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.15, T:0.25
Consensus pattern (20 bp):
TAATAAAGAAGATCTATGAA
Found at i:237519 original size:23 final size:22
Alignment explanation
Indices: 237493--237536 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
237483 AAAATATTTC
*
237493 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
237516 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
237537 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:240125 original size:20 final size:21
Alignment explanation
Indices: 240087--240126 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
240077 TTAAAAGCCA
240087 ATACAAGTGACAATTCTACCG
1 ATACAAGTGACAATTCTACCG
*
240108 ATACAAGTGAC-TTTCTACC
1 ATACAAGTGACAATTCTACC
240127 AAATCAAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (21 bp):
ATACAAGTGACAATTCTACCG
Found at i:240954 original size:52 final size:52
Alignment explanation
Indices: 240878--241064 Score: 293
Period size: 52 Copynumber: 3.6 Consensus size: 52
240868 ATTTCATTTA
* * *
240878 ATACTCACGATGACACATATTCATCGGACCTCATAATTCGTGAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
240930 ATACTCACGATGACACGTAGTCATCGGACCTCATAATCCGTAAACGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * *
240982 ATACTCATGATGACACATAGTCATCGGACCTCATAAACCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
*
241034 ATACTCACAATGACACATAGTCATCGGACCT
1 ATACTCACGATGACACATAGTCATCGGACCT
241065 TTTTTCATTT
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 123 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:242437 original size:21 final size:19
Alignment explanation
Indices: 242399--242438 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
242389 TTTCTACTCA
*
242399 TTTTTCTTTTTTTTTTATT
1 TTTTTCTTTTTTTCTTATT
242418 TTTTTCTCTATTTTTCTTATT
1 TTTTTCT-T-TTTTTCTTATT
242439 CTGGCTAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 10 0.56
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTCTTTTTTTCTTATT
Found at i:260438 original size:41 final size:41
Alignment explanation
Indices: 260372--260585 Score: 293
Period size: 41 Copynumber: 5.2 Consensus size: 41
260362 TAAAATAATA
* * **
260372 TGAAATGATTCAAGCTTCAGCTTAGCAGGATTTTGAGTTGG
1 TGAAATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCGG
* * * **
260413 TAAAATGATTCAAGCTTCGGATTAGCAGGCTTTTAAGATGG
1 TGAAATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCGG
260454 TGAAATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCGG
1 TGAAATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCGG
*
260495 TGGAATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCGG
1 TGAAATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCGG
* * * *
260536 TGGAATGATTCAAGCTTTGGCTTAGCGGGCTTTTGAGCCAG
1 TGAAATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCGG
*
260577 TGTAATGAT
1 TGAAATGAT
260586 GAAAGAACTC
Statistics
Matches: 157, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 157 1.00
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (41 bp):
TGAAATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCGG
Found at i:267936 original size:41 final size:41
Alignment explanation
Indices: 267879--267996 Score: 173
Period size: 41 Copynumber: 2.9 Consensus size: 41
267869 ATAATATGAT
* *
267879 ATGATCCAAGCTTCGGCTTAGCAGGCTTTTGAGCTAGAGAA
1 ATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCAGAGAA
* * * *
267920 ATGATTCAAGCTTCGGCTTAGCAGGGTTTTGAGCCGGTGGA
1 ATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCAGAGAA
*
267961 ATGATTCAAGCTTCGGCTTAGCAGGCTTTTAAGCCA
1 ATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCA
267997 ACGTAATAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (41 bp):
ATGATTCAAGCTTCGGCTTAGCAGGCTTTTGAGCCAGAGAA
Found at i:272384 original size:22 final size:23
Alignment explanation
Indices: 272359--272403 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
272349 TTTTTAAAAA
*
272359 AATTTGATATAAT-TTATATTTT
1 AATTTGATATAATCTGATATTTT
272381 AATTTGATATAATCTGATATTTT
1 AATTTGATATAATCTGATATTTT
272404 TACTTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (23 bp):
AATTTGATATAATCTGATATTTT
Found at i:272652 original size:129 final size:131
Alignment explanation
Indices: 272420--272689 Score: 427
Period size: 129 Copynumber: 2.1 Consensus size: 131
272410 TATAATGCAA
* *
272420 TTAATTATTTTAAATAACATTGTTAACTTTTTCAATTACAATAATGACATTAATTTTTCTTAAAA
1 TTAATTATTTTAAATAACATTGTTAACTTTTTCAATTACAATAATGACATGAATTTTTCATAAAA
* * *
272485 GCATTGGTTCCATAAAAAAAAAATCCATGCCAACATAATGAGGTGAATGGACTGCTCTTAAGTGT
66 GCATCGGTTCCATAAAAAAAAAATCCATGCCAACATAATGAGGTGAAAGGACTGCTCTTAAGGGT
272550 G
131 G
*
272551 TTAATTATTTTAAATAACATTGTTAACTTTTTC-ATTACAATAATGACATGAA-TTTTGATAAAA
1 TTAATTATTTTAAATAACATTGTTAACTTTTTCAATTACAATAATGACATGAATTTTTCATAAAA
* * * **
272614 GCATCGGTTCCATCATAAAAATATCCATGCCAACATAATGAGGTGAAAGGGTTGCTCTTAAGGGT
66 GCATCGGTTCCATAAAAAAAAAATCCATGCCAACATAATGAGGTGAAAGGACTGCTCTTAAGGGT
272679 G
131 G
272680 TTAATTATTT
1 TTAATTATTT
272690 GTACAAATGA
Statistics
Matches: 128, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
129 77 0.60
130 18 0.14
131 33 0.26
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (131 bp):
TTAATTATTTTAAATAACATTGTTAACTTTTTCAATTACAATAATGACATGAATTTTTCATAAAA
GCATCGGTTCCATAAAAAAAAAATCCATGCCAACATAATGAGGTGAAAGGACTGCTCTTAAGGGT
G
Found at i:275888 original size:5 final size:5
Alignment explanation
Indices: 275880--275919 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
275870 AGAAAGTAAT
*
275880 GGTAG GGTAG GGTAG GGTAC GGTAG GGTAG GGTAG GGTAG
1 GGTAG GGTAG GGTAG GGTAG GGTAG GGTAG GGTAG GGTAG
275920 AAGTGAATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.20, C:0.03, G:0.57, T:0.20
Consensus pattern (5 bp):
GGTAG
Found at i:276429 original size:34 final size:35
Alignment explanation
Indices: 276386--276462 Score: 129
Period size: 35 Copynumber: 2.2 Consensus size: 35
276376 CATAAACTAA
*
276386 ACCCAAATATTTTTAA-TTTTTTACCTTTTATCTT
1 ACCCAAATATTTTTAATTTTTTTACCTTTTACCTT
276420 ACCCAAATATTTTTAATTTTTTTACCTTTTACCTT
1 ACCCAAATATTTTTAATTTTTTTACCTTTTACCTT
*
276455 ACACAAAT
1 ACCCAAAT
276463 GTTGTTTACT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 16 0.40
35 24 0.60
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (35 bp):
ACCCAAATATTTTTAATTTTTTTACCTTTTACCTT
Found at i:276488 original size:47 final size:47
Alignment explanation
Indices: 276437--276529 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
276427 TATTTTTAAT
*
276437 TTTTTTACCTTTTACCTTACACAAATGTTGTTTACTTGGACTTTTGA
1 TTTTTTACCTTTTACCCTACACAAATGTTGTTTACTTGGACTTTTGA
*
276484 TTTTTTACCTTTTACCCTACCCAAATGTTGTTTACTTGGACTTTTG
1 TTTTTTACCTTTTACCCTACACAAATGTTGTTTACTTGGACTTTTG
276530 CTTATGTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.51
Consensus pattern (47 bp):
TTTTTTACCTTTTACCCTACACAAATGTTGTTTACTTGGACTTTTGA
Found at i:279534 original size:28 final size:28
Alignment explanation
Indices: 279489--279567 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
279479 TAAATATATA
*
279489 TTATAT-TATTTTA-ATATTTAAAAATT
1 TTATATATATTTTATTTATTTAAAAATT
* **
279515 TTATATATATTTTATTTATTGAAATGTT
1 TTATATATATTTTATTTATTTAAAAATT
279543 TTATATAATCATTTTAATATTATTT
1 TTATAT-AT-ATTTT-AT-TTATTT
279568 TAATATTTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 6 0.14
27 7 0.17
28 15 0.36
29 2 0.05
30 5 0.12
31 2 0.05
32 5 0.12
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (28 bp):
TTATATATATTTTATTTATTTAAAAATT
Found at i:291830 original size:31 final size:31
Alignment explanation
Indices: 291795--291857 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
291785 TTTTTTCAAG
291795 TATGTTTCAATCATTTTTATCATAAGTATGT
1 TATGTTTCAATCATTTTTATCATAAGTATGT
291826 TATGTTTCAATCATTTTTATCATAAGTATGT
1 TATGTTTCAATCATTTTTATCATAAGTATGT
291857 T
1 T
291858 TTAATAAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.52
Consensus pattern (31 bp):
TATGTTTCAATCATTTTTATCATAAGTATGT
Found at i:292674 original size:22 final size:22
Alignment explanation
Indices: 292649--292692 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
292639 CTTTATGATT
* *
292649 GTTTTGCTTGGTTGATGAGAAA
1 GTTTTGCTTGATTAATGAGAAA
292671 GTTTTGCTTGATTAATGAGAAA
1 GTTTTGCTTGATTAATGAGAAA
292693 TTATGTTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.27, T:0.41
Consensus pattern (22 bp):
GTTTTGCTTGATTAATGAGAAA
Found at i:297167 original size:18 final size:16
Alignment explanation
Indices: 297144--297179 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
297134 CTTCGTAAAT
297144 ATTAAATTGAGGAATGAA
1 ATTAAATTGA--AATGAA
297162 ATTAAATTGAAATGAA
1 ATTAAATTGAAATGAA
297178 AT
1 AT
297180 GGTATTGCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (16 bp):
ATTAAATTGAAATGAA
Found at i:299698 original size:42 final size:42
Alignment explanation
Indices: 299650--299744 Score: 172
Period size: 42 Copynumber: 2.2 Consensus size: 42
299640 TTTAACATGC
299650 ATTTCATTTTGAACTAAATTGTATCAAATTAATAATTTTACT
1 ATTTCATTTTGAACTAAATTGTATCAAATTAATAATTTTACT
299692 ATTTCATTTTGAACTAAATTGTATCAAATTAATAATTTTACT
1 ATTTCATTTTGAACTAAATTGTATCAAATTAATAATTTTACT
299734 ATCATTCATTT
1 AT--TTCATTT
299745 CACTTTGTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 44 0.86
44 7 0.14
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.48
Consensus pattern (42 bp):
ATTTCATTTTGAACTAAATTGTATCAAATTAATAATTTTACT
Found at i:301796 original size:29 final size:27
Alignment explanation
Indices: 301763--301817 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 27
301753 TATAATTTCT
301763 TAATTTTATAAGA-ATTTATACTATATATA
1 TAATTTTATAA-ATATTTA-A-TATATATA
301792 TAATTTTATAAATATTTAATATATAT
1 TAATTTTATAAATATTTAATATATAT
301818 TTTTATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 7 0.28
28 2 0.08
29 16 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
TAATTTTATAAATATTTAATATATATA
Found at i:301801 original size:10 final size:10
Alignment explanation
Indices: 301788--301842 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
301778 TTATACTATA
301788 TATATAATTT
1 TATATAATTT
301798 TATA-AATATT
1 TATATAAT-TT
301808 TAATATATATTT
1 T-ATATA-ATTT
301820 T-TATAATTT
1 TATATAATTT
* *
301829 TTTAAAATTT
1 TATATAATTT
301839 TATA
1 TATA
301843 AGATTATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
9 8 0.21
10 21 0.55
11 3 0.08
12 4 0.11
13 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TATATAATTT
Found at i:308237 original size:21 final size:21
Alignment explanation
Indices: 308211--308251 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
308201 GTCACCGAAA
308211 GATCTTCCTCATCTTCTTCAG
1 GATCTTCCTCATCTTCTTCAG
** *
308232 GATCTTTTTCTTCTTCTTCA
1 GATCTTCCTCATCTTCTTCA
308252 TCTTGCTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.29, G:0.07, T:0.51
Consensus pattern (21 bp):
GATCTTCCTCATCTTCTTCAG
Found at i:310978 original size:36 final size:36
Alignment explanation
Indices: 310907--310979 Score: 87
Period size: 36 Copynumber: 2.0 Consensus size: 36
310897 TTAACATCAC
* *
310907 AATCCCAAAATAATTTAATAACACAATAATCTGAAA
1 AATCCCAAAACAATTTAATAACACAATAATATGAAA
*
310943 AATCCCAAAACAATTCATAATAA-ATAATAA-ATGAAA
1 AATCCCAAAACAATT--TAATAACACAATAATATGAAA
310979 A
1 A
310980 TGATTAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 20 0.62
37 6 0.19
38 6 0.19
ACGTcount: A:0.59, C:0.15, G:0.03, T:0.23
Consensus pattern (36 bp):
AATCCCAAAACAATTTAATAACACAATAATATGAAA
Found at i:311571 original size:32 final size:32
Alignment explanation
Indices: 311535--311623 Score: 137
Period size: 32 Copynumber: 2.8 Consensus size: 32
311525 AAGGTGTAGA
311535 ACACCATCACACAACAAATATGTAGCACAAAC
1 ACACCATCACACAACAAATATGTAGCACAAAC
311567 ACACCATCACACAACAAATATGTAGCACAAAC
1 ACACCATCACACAACAAATATGTAGCACAAAC
* * *
311599 AGA--AACACATAACAAATATGTAGCA
1 ACACCATCACACAACAAATATGTAGCA
311624 TGGATAGAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 20 0.37
32 34 0.63
ACGTcount: A:0.52, C:0.27, G:0.08, T:0.13
Consensus pattern (32 bp):
ACACCATCACACAACAAATATGTAGCACAAAC
Found at i:314980 original size:17 final size:16
Alignment explanation
Indices: 314954--314988 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
314944 AGCATAGGAA
*
314954 TTTAATTTAGTTTTAAT
1 TTTAACTTAG-TTTAAT
314971 TTTAACTTAGTTTAAT
1 TTTAACTTAGTTTAAT
314987 TT
1 TT
314989 AGTTTAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.63
Consensus pattern (16 bp):
TTTAACTTAGTTTAAT
Found at i:319888 original size:9 final size:9
Alignment explanation
Indices: 319874--319915 Score: 52
Period size: 8 Copynumber: 4.8 Consensus size: 9
319864 TTTCTAATTC
319874 TTAATTTAT
1 TTAATTTAT
319883 TTAATTTA-
1 TTAATTTAT
*
319891 TTAACTT-T
1 TTAATTTAT
319899 TTAATTTATT
1 TTAATTTA-T
319909 TTAATTT
1 TTAATTT
319916 GTTAATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 12 0.43
9 8 0.29
10 8 0.29
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (9 bp):
TTAATTTAT
Found at i:320766 original size:15 final size:15
Alignment explanation
Indices: 320746--320803 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
320736 CAAGTTAAAG
320746 AAGAAGAAGACCCTA
1 AAGAAGAAGACCCTA
*
320761 AAGAAGAAGATCCTAA
1 AAGAAGAAGACCCT-A
*
320777 AGACGAAGAAGACCTTA
1 A-A-GAAGAAGACCCTA
320794 AAGAAGAAGA
1 AAGAAGAAGA
320804 AGATCCTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 21 0.57
16 3 0.08
17 3 0.08
18 10 0.27
ACGTcount: A:0.55, C:0.14, G:0.22, T:0.09
Consensus pattern (15 bp):
AAGAAGAAGACCCTA
Found at i:320778 original size:33 final size:33
Alignment explanation
Indices: 320741--320803 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
320731 AACAGCAAGT
320741 TAAAGAAGAAGAAGACCCTAAAGAAGAAGATCC
1 TAAAGAAGAAGAAGACCCTAAAGAAGAAGATCC
* *
320774 TAAAGACGAAGAAGACCTTAAAGAAGAAGA
1 TAAAGAAGAAGAAGACCCTAAAGAAGAAGA
320804 AGATCCTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.56, C:0.13, G:0.22, T:0.10
Consensus pattern (33 bp):
TAAAGAAGAAGAAGACCCTAAAGAAGAAGATCC
Found at i:320825 original size:18 final size:18
Alignment explanation
Indices: 320741--320825 Score: 97
Period size: 18 Copynumber: 4.9 Consensus size: 18
320731 AACAGCAAGT
*
320741 TAAAGAAGAAGAAGACCC
1 TAAAGAAGAAGAAGATCC
320759 T--A-AAGAAGAAGATCC
1 TAAAGAAGAAGAAGATCC
*
320774 TAAAGACGAAGAAGA-CC
1 TAAAGAAGAAGAAGATCC
320791 TTAAAGAAGAAGAAGATCC
1 -TAAAGAAGAAGAAGATCC
* *
320810 TGAAGAGGAAGAAGAT
1 TAAAGAAGAAGAAGAT
320826 TTTGAGGAAG
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
15 13 0.23
16 1 0.02
17 3 0.05
18 38 0.67
19 2 0.04
ACGTcount: A:0.53, C:0.12, G:0.25, T:0.11
Consensus pattern (18 bp):
TAAAGAAGAAGAAGATCC
Found at i:320836 original size:36 final size:36
Alignment explanation
Indices: 320741--320824 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
320731 AACAGCAAGT
* *
320741 TAAAGAAGAAGAAGACCCT--A-AAGAAGAAGATCC
1 TAAAGACGAAGAAGACCTTAAAGAAGAAGAAGATCC
320774 TAAAGACGAAGAAGACCTTAAAGAAGAAGAAGATCC
1 TAAAGACGAAGAAGACCTTAAAGAAGAAGAAGATCC
* *
320810 TGAAGAGGAAGAAGA
1 TAAAGACGAAGAAGA
320825 TTTTGAGGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
33 17 0.39
35 1 0.02
36 26 0.59
ACGTcount: A:0.54, C:0.12, G:0.25, T:0.10
Consensus pattern (36 bp):
TAAAGACGAAGAAGACCTTAAAGAAGAAGAAGATCC
Found at i:331022 original size:20 final size:20
Alignment explanation
Indices: 330997--331039 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
330987 CTAACTACTT
330997 TGTACATACGTAAAAGTTTG
1 TGTACATACGTAAAAGTTTG
331017 TGTACATACGTAAAAGTTTG
1 TGTACATACGTAAAAGTTTG
331037 TGT
1 TGT
331040 TTGACAGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (20 bp):
TGTACATACGTAAAAGTTTG
Found at i:332014 original size:25 final size:25
Alignment explanation
Indices: 331978--332034 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
331968 AAATATCACC
*
331978 TCACTCACCATATGAAGACATAAGT
1 TCACTCAACATATGAAGACATAAGT
332003 TCACTCAACATATGAAGACATAAGT
1 TCACTCAACATATGAAGACATAAGT
332028 TCACTCA
1 TCACTCA
332035 CCTCATTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.25
Consensus pattern (25 bp):
TCACTCAACATATGAAGACATAAGT
Done.