Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009429.1 Kokia drynarioides strain JFW-HI SEQ_124136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74511
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.34
Found at i:4624 original size:23 final size:23
Alignment explanation
Indices: 4597--4671 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
4587 ATTGGCTAAA
4597 GTAAAAATTCTTAAATTTTTATG
1 GTAAAAATTCTTAAATTTTTATG
* * ** * * *
4620 GTAAAAAGATATTTGAGTCTAAT-
1 GTAAAAA-TTCTTAAATTTTTATG
4643 -TAAAAATTCTTAAATTTTTATG
1 GTAAAAATTCTTAAATTTTTATG
4665 GTAAAAA
1 GTAAAAA
4672 GATATTTGAG
Statistics
Matches: 35, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
21 8 0.23
22 6 0.17
23 13 0.37
24 8 0.23
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (23 bp):
GTAAAAATTCTTAAATTTTTATG
Found at i:4648 original size:45 final size:45
Alignment explanation
Indices: 4598--4688 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
4588 TTGGCTAAAG
4598 TAAAAATTCTTAAATTTTTATGGTAAAAAGATATTTGAGTCTAAT
1 TAAAAATTCTTAAATTTTTATGGTAAAAAGATATTTGAGTCTAAT
4643 TAAAAATTCTTAAATTTTTATGGTAAAAAGATATTTGAGTCTAAT
1 TAAAAATTCTTAAATTTTTATGGTAAAAAGATATTTGAGTCTAAT
4688 T
1 T
4689 TCAGAATCAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (45 bp):
TAAAAATTCTTAAATTTTTATGGTAAAAAGATATTTGAGTCTAAT
Found at i:14050 original size:40 final size:41
Alignment explanation
Indices: 13971--14066 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 41
13961 AATTTAATAA
* *
13971 CAAA-TAAATAAATAAATAAACAAGATAATAATTATAAATG
1 CAAATTAAATAAAAAAATAAACAAGATAACAATTATAAATG
14011 CAAATTAAATAAAAATAATAAA-AGAGATAACAA-TA-AAATG
1 CAAATTAAATAAAAA-AATAAACA-AGATAACAATTATAAATG
*
14051 -ACATTAAAATAAAAAA
1 CAAATT-AAATAAAAAA
14067 CAACTAGATA
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
39 5 0.10
40 18 0.37
41 12 0.24
42 14 0.29
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.22
Consensus pattern (41 bp):
CAAATTAAATAAAAAAATAAACAAGATAACAATTATAAATG
Found at i:14133 original size:13 final size:14
Alignment explanation
Indices: 14104--14138 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
14094 TACAAAATGC
14104 AAAAATAAACAAAT
1 AAAAATAAACAAAT
*
14118 AAATATAAAC-AAT
1 AAAAATAAACAAAT
14131 AAAAATAA
1 AAAAATAA
14139 TTGAGATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATAAACAAAT
Found at i:14463 original size:27 final size:26
Alignment explanation
Indices: 14432--14510 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 26
14422 GCTTTGAATT
14432 TTCTTTGAATGTATGTCTCAAAAAAAA
1 TTCTTTGAATGTATGTC-CAAAAAAAA
* *
14459 TTCTTTGAGTGT-TGTAC-AAAAAAA
1 TTCTTTGAATGTATGTCCAAAAAAAA
* *
14483 -TCTCTGAATCTTAT-TCCAAAAAAAA
1 TTCTTTGAAT-GTATGTCCAAAAAAAA
14508 TTC
1 TTC
14511 CTCTCTGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
23 7 0.17
24 10 0.24
25 9 0.21
26 5 0.12
27 11 0.26
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (26 bp):
TTCTTTGAATGTATGTCCAAAAAAAA
Found at i:14991 original size:45 final size:45
Alignment explanation
Indices: 14925--15492 Score: 482
Period size: 45 Copynumber: 12.8 Consensus size: 45
14915 GGTGTTGTAA
* * *
14925 CTTCAATCTGCCTCTCTAGATTAGGGGTAAGAGATTGGATGATGG
1 CTTCAATCTGCCTCCCGAGATTAGGGGTAAAAGATTGGATGATGG
** *
14970 CTTCAATCTGCCTCCCGAGATTAGGGGTAAGGGATTAGATGATGG
1 CTTCAATCTGCCTCCCGAGATTAGGGGTAAAAGATTGGATGATGG
*** * * *
15015 CTTCAATCTGCCTTTTTG-GATTAGGGGTAAGAGATTGGATAATGA
1 CTTCAATCTGCC-TCCCGAGATTAGGGGTAAAAGATTGGATGATGG
* * ** * *
15060 CTTCAATCTGCC-CTCTAGATTAGTAGTAAGAGATTGGATTATGG
1 CTTCAATCTGCCTCCCGAGATTAGGGGTAAAAGATTGGATGATGG
*
15104 CTTCAATCTGCC-CCTCTGA-ATTAGGGGTAAAAGATTGGATGATGA
1 CTTCAATCTGCCTCC-C-GAGATTAGGGGTAAAAGATTGGATGATGG
*
15149 CTTCAATCTGCC-CTCTG-GATTA-GGGTAAAAGATTGGATGATGG
1 CTTCAATCTGCCTC-CCGAGATTAGGGGTAAAAGATTGGATGATGG
* * *
15192 CTTCAATCTGCCTCACTG-GATTAGGGGTAAGAGATTGGATAATGG
1 CTTCAATCTGCCTC-CCGAGATTAGGGGTAAAAGATTGGATGATGG
* ** *
15237 CTTCAATTTGCCTATCTAGATTA-GGGTAAAAGATTGGATGATGG
1 CTTCAATCTGCCTCCCGAGATTAGGGGTAAAAGATTGGATGATGG
* ** * * *
15281 -TTACAATCTGCCTCTCTTGATTAGGGGTAAAAGACTAGATGGTGG
1 CTT-CAATCTGCCTCCCGAGATTAGGGGTAAAAGATTGGATGATGG
* * *
15326 CTTCAATCTGCCTCTCTG-GATTAGGGGTAAAAGATTGGATGGTTG
1 CTTCAATCTGCCTC-CCGAGATTAGGGGTAAAAGATTGGATGATGG
* * * * * *
15371 CTTCAATCTACC-CTCAAGATTA-AGGTAAAAGATCGGATGGTGG
1 CTTCAATCTGCCTCCCGAGATTAGGGGTAAAAGATTGGATGATGG
* * * *** * *
15414 CTTTAATTTACC-CCTTTTGATTAGGGTTAAAAGATTGGATGGTGG
1 CTTCAATCTGCCTCC-CGAGATTAGGGGTAAAAGATTGGATGATGG
* *
15459 CTTCAATCTACC-CCTCTAGATTAGGGGTAAAAGA
1 CTTCAATCTGCCTCC-CGAGATTAGGGGTAAAAGA
15493 CTAGATGTGG
Statistics
Matches: 437, Mismatches: 70, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
43 64 0.15
44 97 0.22
45 270 0.62
46 6 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (45 bp):
CTTCAATCTGCCTCCCGAGATTAGGGGTAAAAGATTGGATGATGG
Found at i:15128 original size:89 final size:89
Alignment explanation
Indices: 14925--15488 Score: 588
Period size: 89 Copynumber: 6.3 Consensus size: 89
14915 GGTGTTGTAA
* *
14925 CTTCAATCTGCCTCTCT-AGATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCCCGAG
1 CTTCAATCTGCCTCTCTGA-ATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCTCTAG
** *
14989 ATTAGGGGTAAGGGATTAGATGATGG
65 ATTA-GGGTAAAAGATTGGATGATGG
* * * * *
15015 CTTCAATCTGCCTTTTTGGATTAGGGGTAAGAGATTGGATAATGACTTCAATCTGCC-CTCTAGA
1 CTTCAATCTGCCTCTCTGAATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCTCTAGA
* * *
15079 TTAGTAGTAAGAGATTGGATTATGG
66 TTAG-GGTAAAAGATTGGATGATGG
* * * *
15104 CTTCAATCTGCCCCTCTGAATTAGGGGTAAAAGATTGGATGATGACTTCAATCTGCC-CTCTGGA
1 CTTCAATCTGCCTCTCTGAATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCTCTAGA
15168 TTAGGGTAAAAGATTGGATGATGG
66 TTAGGGTAAAAGATTGGATGATGG
* * * * *
15192 CTTCAATCTGCCTCACTGGATTAGGGGTAAGAGATTGGATAATGGCTTCAATTTGCCTATCTAGA
1 CTTCAATCTGCCTCTCTGAATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCTCTAGA
15257 TTAGGGTAAAAGATTGGATGATGG
66 TTAGGGTAAAAGATTGGATGATGG
* * * * *
15281 -TTACAATCTGCCTCTCTTG-ATTAGGGGTAAAAGACTAGATGGTGGCTTCAATCTGCCTCTCTG
1 CTT-CAATCTGCCTCTC-TGAATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCTCTA
* *
15344 GATTAGGGGTAAAAGATTGGATGGTTG
64 GATTA-GGGTAAAAGATTGGATGATGG
* * * * * * * * * * * *
15371 CTTCAATCTACC-CTC-AAGATTA-AGGTAAAAGATCGGATGGTGGCTTTAATTTACCCCTTTTG
1 CTTCAATCTGCCTCTCTGA-ATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCTCTAG
*
15433 ATTAGGGTTAAAAGATTGGATGGTGG
65 ATTAGGG-TAAAAGATTGGATGATGG
* *
15459 CTTCAATCTACCCCTCT-AGATTAGGGGTAA
1 CTTCAATCTGCCTCTCTGA-ATTAGGGGTAA
15489 AAGACTAGAT
Statistics
Matches: 406, Mismatches: 55, Indels: 26
0.83 0.11 0.05
Matches are distributed among these distances:
87 3 0.01
88 133 0.33
89 183 0.45
90 85 0.21
91 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (89 bp):
CTTCAATCTGCCTCTCTGAATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCTCTAGA
TTAGGGTAAAAGATTGGATGATGG
Found at i:15351 original size:222 final size:222
Alignment explanation
Indices: 14924--15492 Score: 680
Period size: 222 Copynumber: 2.5 Consensus size: 222
14914 TGGTGTTGTA
* *
14924 ACTTCAATCTGCCTCTCTAGATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTCCCGAG
1 ACTTCAATCTGCC-CTCTAGATTA-GGGTAAAAGATTGGATGATGGCTTCAATCTGCCTCCTG-G
* * * * * *
14989 ATTAGGGGTAAGGGATTAGATGATGGCTTCAATCTGCCTTTTTGGATTAGGGGTAAGAGATTGGA
63 ATTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTATCTAGATTAGGGGTAAAAGATTGGA
* * * * *
15054 TAATGACTTCAATCTGCCCTCTAGATTAGTAGTAAGAGATTGGATTATGGCTTCAATCTGCCCCT
128 TAATGACTTCAATCTGCCCTCTAGATTAGGAGTAAAAGACTAGATGATGGCTTCAATCTGCCCCT
15119 CTGAATTAGGGGTAAAAGATTGGAT-GATG
193 CTGAATTAGGGGTAAAAGATTGGATGGATG
*
15148 ACTTCAATCTGCCCTCTGGATTAGGGTAAAAGATTGGATGATGGCTTCAATCTGCCTCACTGGAT
1 ACTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGATGGCTTCAATCTGCCTC-CTGGAT
* * *
15213 TAGGGGTAAGAGATTGGATAATGGCTTCAATTTGCCTATCTAGATTA-GGGTAAAAGATTGGATG
65 TAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTATCTAGATTAGGGGTAAAAGATTGGATA
* * * * *
15277 ATG-GTTACAATCTGCCTCTCTTGATTAGGGGTAAAAGACTAGATGGTGGCTTCAATCTGCCTCT
130 ATGACTT-CAATCTGCC-CTCTAGATTAGGAGTAAAAGACTAGATGATGGCTTCAATCTGCCCCT
* *
15341 CTGGATTAGGGGTAAAAGATTGGATGGTTG
193 CTGAATTAGGGGTAAAAGATTGGATGGATG
* * * * * * * * *
15371 -CTTCAATCTACCCTCAAGATTAAGGTAAAAGATCGGATGGTGGCTTTAATTTACC-CCTTTTGA
1 ACTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGATGGCTTCAATCTGCCTCC--TGGA
* * * * **
15434 TTAGGGTTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTAGATTAGGGGTAAAAGA
64 TTAGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTATCTAGATTAGGGGTAAAAGA
15493 CTAGATGTGG
Statistics
Matches: 296, Mismatches: 42, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
220 3 0.01
221 28 0.09
222 228 0.77
223 24 0.08
224 13 0.04
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (222 bp):
ACTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGATGGCTTCAATCTGCCTCCTGGATT
AGGGGTAAGAGATTGGATGATGGCTTCAATCTGCCTATCTAGATTAGGGGTAAAAGATTGGATAA
TGACTTCAATCTGCCCTCTAGATTAGGAGTAAAAGACTAGATGATGGCTTCAATCTGCCCCTCTG
AATTAGGGGTAAAAGATTGGATGGATG
Found at i:15604 original size:49 final size:49
Alignment explanation
Indices: 15553--16018 Score: 323
Period size: 49 Copynumber: 9.5 Consensus size: 49
15543 ATATTCGCCG
* * *
15553 TTACGGCTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGATCCATCG
1 TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGATCCATCA
* * * * ** **
15602 TTATGGCTTCAATTTATCCCTTTTTGGTTTTAAGGTGTTAGATTTATCA
1 TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGATCCATCA
* * * * *
15651 TTGCGACTTCAATCTATCCCTTTTC-GATTTTAAGGTGTTAGGTTCATCG
1 TTACGACTTCAATCTATCCCTCTTCAG-TTTTAAGGTGTTAGATCCATCA
* * * * **
15700 TTGCGACTTCAACCTATCCCTCTTTAGTTTTAAGGTGTAAGAT-TTTCCA
1 TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGATCCAT-CA
* * * * * * * * *
15749 TTGCGGCTTTAATCTTTCCCTTTTCGGTTTTAGGGTGTTAGGTCC-GCTA
1 TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGATCCATC-A
* * * * * **
15798 TTACGACTTCAACCTATCCCTCTTAAATTTTAAGGTATAAGATCCGCCA
1 TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGATCCATCA
* * * * * * *
15847 TTATGACTTTAATCTTTCTCTCTTCAATTTTAAGGTGTTA-AGTTCATCG
1 TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGA-TCCATCA
* * * * *
15896 TTACGACTTTAACCTATCCCTCTTTAGTTTTAAGGTGTAAGATCTATCA
1 TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGATCCATCA
* * * * *
15945 TTGCGACTTCAATATTTCCCTC-TCAGTTTTAAGGTGTTAGACCCA-CTG
1 TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGATCCATC-A
* * *
15993 TTACGGCTTTAATCTATCGCTCTTCA
1 TTACGACTTCAATCTATCCCTCTTCA
16019 ACTCTATGAT
Statistics
Matches: 318, Mismatches: 89, Indels: 20
0.74 0.21 0.05
Matches are distributed among these distances:
47 1 0.00
48 39 0.12
49 275 0.86
50 3 0.01
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.42
Consensus pattern (49 bp):
TTACGACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTTAGATCCATCA
Found at i:15662 original size:98 final size:98
Alignment explanation
Indices: 15559--16016 Score: 460
Period size: 98 Copynumber: 4.7 Consensus size: 98
15549 GCCGTTACGG
* * ** *
15559 CTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGATCCATCGTTATGGCTTCAATTTATCCCTT
1 CTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGATCCATCGTTACGACTTCAACCTATCCCTC
* * *
15624 TTTGGTTTTAAGGTGTTAGATTTATCATTGCGA
66 TTTAGTTTTAAGGTGTAAGATCTATCATTGCGA
* * * * *
15657 CTTCAATCTATCCCTTTTC-GATTTTAAGGTGTTAGGTTCATCGTTGCGACTTCAACCTATCCCT
1 CTTCAATCTTTCCCTCTTCAG-TTTTAAGGTGTTAGATCCATCGTTACGACTTCAACCTATCCCT
* *
15721 CTTTAGTTTTAAGGTGTAAGAT-TTTCCATTGCGG
65 CTTTAGTTTTAAGGTGTAAGATCTAT-CATTGCGA
* * * * * * *
15755 CTTTAATCTTTCCCTTTTCGGTTTTAGGGTGTTAGGTCC-GCTATTACGACTTCAACCTATCCCT
1 CTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGATCCATC-GTTACGACTTCAACCTATCCCT
* * * *** **
15819 CTTAAATTTTAAGGTATAAGATCCGCCATTATGA
65 CTTTAGTTTTAAGGTGTAAGATCTATCATTGCGA
* * * * *
15853 CTTTAATCTTTCTCTCTTCAATTTTAAGGTGTTA-AGTTCATCGTTACGACTTTAACCTATCCCT
1 CTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGA-TCCATCGTTACGACTTCAACCTATCCCT
15917 CTTTAGTTTTAAGGTGTAAGATCTATCATTGCGA
65 CTTTAGTTTTAAGGTGTAAGATCTATCATTGCGA
* * * * * *
15951 CTTCAATATTTCCCTC-TCAGTTTTAAGGTGTTAGACCCA-CTGTTACGGCTTTAATCTATCGCT
1 CTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGATCCATC-GTTACGACTTCAACCTATCCCT
16014 CTT
65 CTT
16017 CAACTCTATG
Statistics
Matches: 294, Mismatches: 57, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
96 1 0.00
97 44 0.15
98 247 0.84
99 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (98 bp):
CTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGATCCATCGTTACGACTTCAACCTATCCCTC
TTTAGTTTTAAGGTGTAAGATCTATCATTGCGA
Found at i:15765 original size:196 final size:196
Alignment explanation
Indices: 15531--15985 Score: 520
Period size: 196 Copynumber: 2.3 Consensus size: 196
15521 TCTTTAGTTT
* ** * *
15531 TTTTAAGGTGTAATATTCGCCGTTACGGCTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGAT
1 TTTTAAGGTGTAAGATTATCCATTGCGGCTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGAT
* * * * ** * *** * * ** * *
15596 CC-ATCGTTATGGCTTCAATTTATCCCTTTTTGGTTTTAAGGTGTTAGATTTATCATTGCGACTT
66 CCGCT-ATTACGACTTCAACCTATCCCTCTTAAATTTTAAGGTATAAGATCCACCATTACGACTT
* * * *
15660 CAATCTATCCCTTTTCGATTTTAAGGTGTTAGGTTCATCGTTGCGACTTCAACCTATCCCTCTTT
130 CAATCTATCCCTCTTCAATTTTAAGGTGTTAAGTTCATCGTTACGACTTCAACCTATCCCTCTTT
15725 AG
195 AG
* * * * * *
15727 TTTTAAGGTGTAAGATTTTCCATTGCGGCTTTAATCTTTCCCTTTTCGGTTTTAGGGTGTTAGGT
1 TTTTAAGGTGTAAGATTATCCATTGCGGCTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGAT
* * *
15792 CCGCTATTACGACTTCAACCTATCCCTCTTAAATTTTAAGGTATAAGATCCGCCATTATGACTTT
66 CCGCTATTACGACTTCAACCTATCCCTCTTAAATTTTAAGGTATAAGATCCACCATTACGACTTC
* * *
15857 AATCTTTCTCTCTTCAATTTTAAGGTGTTAAGTTCATCGTTACGACTTTAACCTATCCCTCTTTA
131 AATCTATCCCTCTTCAATTTTAAGGTGTTAAGTTCATCGTTACGACTTCAACCTATCCCTCTTTA
15922 G
196 G
* *
15923 TTTTAAGGTGTAAGATCTAT-CATTGCGACTTCAATATTTCCCTC-TCAGTTTTAAGGTGTTAGA
1 TTTTAAGGTGTAAGAT-TATCCATTGCGGCTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGA
15986 CCCACTGTTA
Statistics
Matches: 213, Mismatches: 44, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
195 16 0.08
196 194 0.91
197 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.43
Consensus pattern (196 bp):
TTTTAAGGTGTAAGATTATCCATTGCGGCTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGAT
CCGCTATTACGACTTCAACCTATCCCTCTTAAATTTTAAGGTATAAGATCCACCATTACGACTTC
AATCTATCCCTCTTCAATTTTAAGGTGTTAAGTTCATCGTTACGACTTCAACCTATCCCTCTTTA
G
Found at i:29657 original size:3 final size:3
Alignment explanation
Indices: 29649--29724 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
29639 TGAGGATCTT
29649 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
29697 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
29725 GTTATTTTTT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:29736 original size:12 final size:13
Alignment explanation
Indices: 29647--29759 Score: 61
Period size: 15 Copynumber: 8.3 Consensus size: 13
29637 TGTGAGGATC
*
29647 TTTTATTATTATT
1 TTTTATGATTATT
*
29660 ATTATTATTATTATT
1 -TT-TTATGATTATT
*
29675 ATTATTATTATTATT
1 -TT-TTATGATTATT
*
29690 ATTATTATTATTATT
1 -TT-TTATGATTATT
*
29705 ATTATTATTATTA-T
1 -TT-TTATGATTATT
*
29719 TATTATG-TTATT
1 TTTTATGATTATT
*
29731 TTTTATGATGATT
1 TTTTATGATTATT
*
29744 TTTTATGCTT-TT
1 TTTTATGATTATT
29756 TTTT
1 TTTT
29760 TTTTATGAAA
Statistics
Matches: 90, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
11 3 0.03
12 17 0.19
13 13 0.14
14 3 0.03
15 54 0.60
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.69
Consensus pattern (13 bp):
TTTTATGATTATT
Found at i:31092 original size:27 final size:27
Alignment explanation
Indices: 31054--31107 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
31044 AGGAATAATA
31054 TGATTCTGGCTCAAAAGAGCATTATTC
1 TGATTCTGGCTCAAAAGAGCATTATTC
* *
31081 TGATTCTGGCTCGAAAGAGCGTTATTC
1 TGATTCTGGCTCAAAAGAGCATTATTC
31108 ATATTTTGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (27 bp):
TGATTCTGGCTCAAAAGAGCATTATTC
Found at i:31142 original size:24 final size:24
Alignment explanation
Indices: 31110--31203 Score: 152
Period size: 24 Copynumber: 3.9 Consensus size: 24
31100 CGTTATTCAT
31110 ATTTTGGGCTCGTAAGAGCTAACC
1 ATTTTGGGCTCGTAAGAGCTAACC
31134 ATTTTGGGCTCGTAAGAGCTAACC
1 ATTTTGGGCTCGTAAGAGCTAACC
* *
31158 TTTTTGGGCTCGTAAGAGCTAACA
1 ATTTTGGGCTCGTAAGAGCTAACC
**
31182 ATTTTGGGCTCGTGTGAGCTAA
1 ATTTTGGGCTCGTAAGAGCTAA
31204 GTTGTCTGTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (24 bp):
ATTTTGGGCTCGTAAGAGCTAACC
Found at i:31217 original size:48 final size:48
Alignment explanation
Indices: 31114--31220 Score: 144
Period size: 48 Copynumber: 2.2 Consensus size: 48
31104 ATTCATATTT
* *
31114 TGGGCTCGTAAGAGCTAACCATTTTGGGCTCGTAAGAGCTAACCTTTT
1 TGGGCTCGTAAGAGCTAACAATTTTGGGCTCGTAAGAGCTAACCTTTC
** *
31162 TGGGCTCGTAAGAGCTAACAATTTTGGGCTCGTGTGAGCTAA-GTTGTC
1 TGGGCTCGTAAGAGCTAACAATTTTGGGCTCGTAAGAGCTAACCTT-TC
*
31210 TGTGCTCGTAA
1 TGGGCTCGTAA
31221 TGAGTTAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
47 2 0.04
48 50 0.96
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (48 bp):
TGGGCTCGTAAGAGCTAACAATTTTGGGCTCGTAAGAGCTAACCTTTC
Found at i:37187 original size:31 final size:32
Alignment explanation
Indices: 37122--37192 Score: 101
Period size: 32 Copynumber: 2.2 Consensus size: 32
37112 TAATTTTCGA
*
37122 GACAAGTTCAAGTACCAATTAGGTACTTTTTG
1 GACAAGTTCAAGTACCAACTAGGTACTTTTTG
*
37154 GACAAGTTCATA-TACTAACTAGGTAC-TTTTG
1 GACAAGTTCA-AGTACCAACTAGGTACTTTTTG
37185 GACAAGTT
1 GACAAGTT
37193 AAAGGGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 13 0.36
32 22 0.61
33 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (32 bp):
GACAAGTTCAAGTACCAACTAGGTACTTTTTG
Found at i:37612 original size:2 final size:2
Alignment explanation
Indices: 37605--37637 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
37595 TCTAGTTTTC
*
37605 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37638 GGAGTGTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:39147 original size:17 final size:19
Alignment explanation
Indices: 39112--39148 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
39102 TGTTTTAAAC
39112 TATTTATGAAAATTTTATA
1 TATTTATGAAAATTTTATA
39131 TATTT-TGAAAA-TTTATA
1 TATTTATGAAAATTTTATA
39148 T
1 T
39149 GACATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 6 0.33
19 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TATTTATGAAAATTTTATA
Found at i:40488 original size:16 final size:17
Alignment explanation
Indices: 40464--40497 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
40454 TTAGGGGGAG
*
40464 AAAATAAATAG-TTGGA
1 AAAAGAAATAGATTGGA
40480 AAAAGAAATAGATTGGA
1 AAAAGAAATAGATTGGA
40497 A
1 A
40498 TGAATTATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (17 bp):
AAAAGAAATAGATTGGA
Found at i:42845 original size:7 final size:7
Alignment explanation
Indices: 42833--42857 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
42823 CTCCCTTAAC
42833 CTTCCAT
1 CTTCCAT
42840 CTTCCAT
1 CTTCCAT
42847 CTTCCAT
1 CTTCCAT
42854 CTTC
1 CTTC
42858 TTTAGCCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (7 bp):
CTTCCAT
Found at i:44401 original size:62 final size:58
Alignment explanation
Indices: 44293--44409 Score: 155
Period size: 58 Copynumber: 1.9 Consensus size: 58
44283 AAAAAAAATA
* *
44293 TCAAGTTCAAGTACCAAATTGGGTCCAAAAAAATTAGATACCAAATTAAGAAAAATTG
1 TCAAGTTCAAGTACCAAATTGAGTCAAAAAAAATTAGATACCAAATTAAGAAAAATTG
*
44351 TCAAGTTCAAGTACCAAATTGAGT-AAAAAAAAGGGGTTTAGATATCAAATTAAGAAAAA
1 TCAAGTTCAAGTACCAAATTGAGTCAAAAAAAA-----TTAGATACCAAATTAAGAAAAA
44410 AGTATCAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
57 7 0.14
58 23 0.45
62 21 0.41
ACGTcount: A:0.50, C:0.11, G:0.15, T:0.24
Consensus pattern (58 bp):
TCAAGTTCAAGTACCAAATTGAGTCAAAAAAAATTAGATACCAAATTAAGAAAAATTG
Found at i:44587 original size:29 final size:28
Alignment explanation
Indices: 44550--44604 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
44540 TTTTTTGTAC
* *
44550 TTTTGAAATTTAGTTCATTTATTTTTAT
1 TTTTGAAATTTAGTCCATTTACTTTTAT
44578 TTTTAGAAATTTAGTCCATTTACTTTT
1 TTTT-GAAATTTAGTCCATTTACTTTT
44605 CAGATTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (28 bp):
TTTTGAAATTTAGTCCATTTACTTTTAT
Found at i:49799 original size:14 final size:14
Alignment explanation
Indices: 49758--49800 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
49748 CAGTCAAGTA
*
49758 AATTAATTGATTTTT
1 AATTAATTGA-ATTT
* *
49773 AATTAAATAAATTT
1 AATTAATTGAATTT
49787 AATTAATTGAATTT
1 AATTAATTGAATTT
49801 TTTAAATTCA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 15 0.65
15 8 0.35
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (14 bp):
AATTAATTGAATTT
Found at i:50970 original size:18 final size:19
Alignment explanation
Indices: 50931--50971 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
50921 ATAGATATAT
*
50931 TTTTATAGTTTATAATTTA
1 TTTTATAGTTTATAAATTA
*
50950 TTTTATATTTTA-AAATTA
1 TTTTATAGTTTATAAATTA
50968 TTTT
1 TTTT
50972 TTTCTATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTATAGTTTATAAATTA
Found at i:53035 original size:30 final size:31
Alignment explanation
Indices: 52980--53037 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
52970 ATAAAAACAA
* *
52980 TCACTCAACTAATTCATTTGTTCAATTTTAG
1 TCACCCAACTAATTAATTTGTTCAATTTTAG
*
53011 TCACCCAACT-ATTAATTTTTTCAATTT
1 TCACCCAACTAATTAATTTGTTCAATTT
53038 AATCATCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.29, C:0.21, G:0.03, T:0.47
Consensus pattern (31 bp):
TCACCCAACTAATTAATTTGTTCAATTTTAG
Found at i:55477 original size:15 final size:16
Alignment explanation
Indices: 55452--55484 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
55442 AACTTAATTA
*
55452 TATCGATTATGCCTAT
1 TATCGATTATGCATAT
55468 TATC-ATTATGCATAT
1 TATCGATTATGCATAT
55483 TA
1 TA
55485 CAGCACTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.45
Consensus pattern (16 bp):
TATCGATTATGCATAT
Found at i:56958 original size:12 final size:13
Alignment explanation
Indices: 56930--56967 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
56920 TTCAAAATTA
56930 AAATAAATATTTTT
1 AAATAAATA-TTTT
56944 AAATAAATA-TTT
1 AAATAAATATTTT
56956 AAATAAAT-TTTT
1 AAATAAATATTTT
56968 TTGATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 14 0.61
14 9 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AAATAAATATTTT
Found at i:60422 original size:51 final size:53
Alignment explanation
Indices: 60345--60457 Score: 158
Period size: 51 Copynumber: 2.2 Consensus size: 53
60335 AATACAAAAA
** *
60345 GTTCGATGACTCGTGTCATTGTGAGTTATATGAATCCTATTACGGATTAAA-G
1 GTTCGATGACTCGTGTCACAGTGAGTTATATGAATCCTATTACGAATTAAAGG
* *
60397 GTTCGATGACTC-TGTCACAGTGAGTTATATGGATCTTATTACGAATTAAAGG
1 GTTCGATGACTCGTGTCACAGTGAGTTATATGAATCCTATTACGAATTAAAGG
*
60449 GTCCGATGA
1 GTTCGATGA
60458 TTTTATGTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 33 0.61
52 21 0.39
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (53 bp):
GTTCGATGACTCGTGTCACAGTGAGTTATATGAATCCTATTACGAATTAAAGG
Found at i:61679 original size:45 final size:45
Alignment explanation
Indices: 61615--61704 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
61605 AATGCTAACA
61615 TTTTATTCCTTCTTACCAAGAACAATAATCCTAATTACTCTTTTG
1 TTTTATTCCTTCTTACCAAGAACAATAATCCTAATTACTCTTTTG
61660 TTTTATTCCTTCTTACCAAGAACAATAATCCTAATTACTCTTTTG
1 TTTTATTCCTTCTTACCAAGAACAATAATCCTAATTACTCTTTTG
61705 AATTGGTAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.44
Consensus pattern (45 bp):
TTTTATTCCTTCTTACCAAGAACAATAATCCTAATTACTCTTTTG
Found at i:70467 original size:3 final size:3
Alignment explanation
Indices: 70461--70494 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
70451 CATCATAATC
70461 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
70495 GGGTTTCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:71058 original size:151 final size:149
Alignment explanation
Indices: 70903--71573 Score: 753
Period size: 150 Copynumber: 4.4 Consensus size: 149
70893 AATTTTGGGA
* * * * * *
70903 AAAGTTTTTGTTTTTTTTTTAAACAATTTCAAAATAAAAGTTTTGTTTTTTAAATAAAATAGTAA
1 AAAG-TTTTG-TTTTTTTTT-AACTATTTCGAAATAAAAATTTAGATTTTTAAGTAAAATAGTAA
* * * * *
70968 TTTCTTT-AAAAAAA-ATAAAGTTTATATTTTTAAAAATAAAAATTTGTTCTTTTAATTATTTTA
63 TTTCTTTAAAAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTT-TTTTAATGATTTTA
71031 AAGAAAATA-TTAAATTTTTAAAC
127 AAGAAAA-AGTTAAATTTTTAAAC
* * * *
71054 AAAGTTTTG-ATTTTTTTAATTATTTCGAAAT-AAAATTTGGATTTTTAAGTAGAATAGTAATTT
1 AAAGTTTTGTTTTTTTTTAACTATTTCGAAATAAAAATTTAGATTTTTAAGTAAAATAGTAA-TT
* * * * * *
71117 TCTTTAAAAAAAAAGAAAAAGTTTAGATTTTTAAAAATAAAAATCTGTTTTTTAGTTATTTTAAG
65 TCTTT-AAAAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAATGATTTTAAA
*
71182 GAAAAAGTTTAATTTTTTAAAC
129 GAAAAAG-TTAAATTTTTAAAC
* ** *
71204 AAAGTTTT-TGTTTTTTTAACTATTTTTAAATAAAAATTTAGATTTTTAAGTAAAATAGTGATTT
1 AAAGTTTTGTTTTTTTTTAACTATTTCGAAATAAAAATTTAGATTTTTAAGTAAAATAGT-AATT
* * *
71268 TCTTTAAAAAAAAGAGAAAATTTAGATTTTAAAAAATAAAAGTATG-TTTTAAATGATTTTAAAG
65 TCTTTAAAAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAATGATTTTAAAG
*
71332 AAAAAATTTAAATTTTTAAAC
130 -AAAAAGTTAAATTTTTAAAC
* *
71353 AAAGTTTTGATTTTTTTTTAAACTATTTCGAAATAAAAATTTAGATTTTTTTAGTAAAGTAGTAA
1 AAAGTTTTG-TTTTTTTTT-AACTATTTCGAAATAAAAATTTAGA-TTTTTAAGTAAAATAGTAA
* * * *
71418 TTTTCATTAAAAAAAGAAAGAAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTAGTGATTTT
63 -TTTCTTTAAAAAAA-AGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAATGATTTT
71483 AAAGAAAAAGTTCAAATTTTTAAAC
126 AAAGAAAAAGTT-AAATTTTTAAAC
* * * * * * *
71508 AAAATTTTGATTTTTTTTTAATTATTTCGAAATAAAAGTTTTGATTTTGAAGTAAAGTAGTGATT
1 AAAGTTTTG-TTTTTTTTTAACTATTTCGAAATAAAAATTTAGATTTTTAAGTAAAATAGTAATT
71573 T
65 T
71574 TATTTTAATC
Statistics
Matches: 448, Mismatches: 54, Indels: 35
0.83 0.10 0.07
Matches are distributed among these distances:
146 24 0.05
147 18 0.04
148 8 0.02
149 61 0.14
150 116 0.26
151 44 0.10
152 28 0.06
153 44 0.10
154 59 0.13
155 46 0.10
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (149 bp):
AAAGTTTTGTTTTTTTTTAACTATTTCGAAATAAAAATTTAGATTTTTAAGTAAAATAGTAATTT
CTTTAAAAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAATGATTTTAAAGA
AAAAGTTAAATTTTTAAAC
Found at i:72142 original size:17 final size:18
Alignment explanation
Indices: 72113--72153 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
72103 AATTTGGCAT
**
72113 TTTATT-TTAATTTTTTA
1 TTTATTCTTAATTTCATA
72130 TTTATTCTT-ATTTCATA
1 TTTATTCTTAATTTCATA
72147 TTTATTC
1 TTTATTC
72154 ATTTTCATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTATTCTTAATTTCATA
Found at i:73012 original size:240 final size:237
Alignment explanation
Indices: 72589--73058 Score: 724
Period size: 240 Copynumber: 2.0 Consensus size: 237
72579 AAAATAATAA
* * * * *
72589 TAATGATAAATGATTGAAAAAGTTGTAGTTGAATTTTAATATTTCTCTTAATTCATTAGTAATTT
1 TAATGATAAAAGATCGAAAAAGTTGGAGATGAATTTTAATATTTCCCTTAATTCATTAGTAATTT
* * * *
72654 TTAGGTTTTTTTAGGATTCTAAAATAAAATTAATTTTAAGAAGTGAATGTATTTTGCTAGAGTTA
66 TTAGGTTTTTTTAGGATTCTAAAATAAAATTAATTTTAAGAAGTGAAGGTATTTTACTAAAATTA
*
72719 TTTAGGTATCCTCTAGGGTTCTCGTTAGAAGTAAAAATCTCTAATTCAAGTTTTAAATTAAATAA
131 TTTAGGTATCCTCTAGGGTTCTCGTTAGAAGTAAAAATCTCTAATTCAAGTTTTAAAATAAATAA
*
72784 GATTGGTGAACACGTCTTAGTCAAGTTATAAGTAAATCGGAG
196 GATTGGTGAACACGTCTTAGTCAAGTTAAAAGTAAATCGGAG
*
72826 TAATGATAAAAGATCGAATAAGTTGGAGATGAATTTTAATATTTCCCTTAATTCATTAGTAATAT
1 TAATGATAAAAGATCGAAAAAGTTGGAGATGAATTTTAATATTTCCCTTAATTCATTAGT-A-A-
* * *
72891 TTTTTAGGTTTTTTTAGGATTCTAAAATAGAATTAATTTTAATAATTGAAGGTATTTTACTAAAA
63 TTTTTAGGTTTTTTTAGGATTCTAAAATAAAATTAATTTTAAGAAGTGAAGGTATTTTACTAAAA
* * * *
72956 TTATTTAGGTATCCTTTAGGGTTCTTGTTAGAAGTAAAAATCTCTAATTTAAGTTTTAAAATAGA
128 TTATTTAGGTATCCTCTAGGGTTCTCGTTAGAAGTAAAAATCTCTAATTCAAGTTTTAAAATAAA
* *
73021 TAAGTTTGGTGAATACGTCTTAGTCAAGTTAAAAGTAA
193 TAAGATTGGTGAACACGTCTTAGTCAAGTTAAAAGTAA
73059 TCTGGAGGCA
Statistics
Matches: 209, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
237 54 0.26
238 1 0.00
239 1 0.00
240 153 0.73
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (237 bp):
TAATGATAAAAGATCGAAAAAGTTGGAGATGAATTTTAATATTTCCCTTAATTCATTAGTAATTT
TTAGGTTTTTTTAGGATTCTAAAATAAAATTAATTTTAAGAAGTGAAGGTATTTTACTAAAATTA
TTTAGGTATCCTCTAGGGTTCTCGTTAGAAGTAAAAATCTCTAATTCAAGTTTTAAAATAAATAA
GATTGGTGAACACGTCTTAGTCAAGTTAAAAGTAAATCGGAG
Done.