genome.fa.s9434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009434.1 Kokia drynarioides strain JFW-HI SEQ_124141, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185263

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3258--3285	13	2.2	13	100	0	56	42	0	0	57	0.99
3361--3415	17	3.3	17	72	12	60	38	7	1	52	1.40
3924--3963	21	2.0	19	85	9	53	52	0	0	47	1.00
9874--9938	23	2.8	23	85	0	85	29	36	15	18	1.91
17139--17215	24	3.3	23	78	8	75	28	28	15	27	1.96
17155--17217	23	2.7	24	87	7	85	26	26	19	26	1.99
18474--18498	8	3.1	8	100	0	50	52	12	0	36	1.39
21355--21424	28	2.5	28	79	9	79	64	1	2	31	1.17
28125--28190	31	2.1	31	83	10	82	27	19	9	43	1.81
28145--28208	30	2.1	31	85	2	85	31	18	10	39	1.86
29135--29244	51	2.2	51	96	0	202	34	20	20	24	1.96
39617--39654	18	2.1	18	100	0	76	34	7	26	31	1.85
52342--52428	43	2.0	43	93	0	147	39	28	10	21	1.86
53913--53956	18	2.5	18	85	3	63	56	4	0	38	1.20
54051--54104	16	3.2	16	84	7	63	62	0	0	37	0.95
54055--54120	10	6.9	10	77	18	52	60	1	0	37	1.06
54061--54114	20	2.8	20	75	13	60	61	0	0	38	0.96
60238--60284	16	2.9	16	72	15	51	68	2	0	29	1.02
61659--61708	21	2.4	21	83	3	57	48	18	14	20	1.82
62837--62909	27	2.7	27	91	0	110	26	19	24	30	1.98
65587--65621	18	1.9	18	88	0	52	42	11	17	28	1.83
66840--66881	21	2.0	20	82	13	50	9	45	4	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77043--77081	12	3.2	12	82	13	53	71	0	28	0	0.86
77489--77528	17	2.3	18	80	20	50	12	20	10	57	1.63
86800--86833	17	2.0	17	100	0	68	23	23	5	47	1.73
92936--92987	27	1.9	27	100	0	104	38	23	21	17	1.93
103764--103843	17	4.6	17	82	1	79	45	11	22	21	1.83
104272--104311	12	3.3	12	86	10	55	0	35	0	65	0.93
104279--104315	12	3.1	12	88	0	56	0	37	0	62	0.96
112315--112348	15	2.3	15	90	10	52	64	11	5	17	1.45
115890--115935	22	2.0	23	84	12	60	39	15	2	43	1.59
116298--116328	8	4.0	8	91	8	55	12	0	0	87	0.55
116298--116328	15	2.0	16	93	6	55	12	0	0	87	0.55
121544--121589	16	3.1	15	82	14	51	30	2	2	65	1.16
126860--126926	26	2.6	25	81	11	82	50	1	1	46	1.19
126880--126935	27	2.0	27	83	10	69	51	0	1	46	1.11
129913--130088	87	2.0	87	91	0	280	35	10	26	26	1.89
150182--150216	12	2.9	12	91	0	52	37	11	8	42	1.72
154190--154219	15	2.0	15	93	0	51	83	0	16	0	0.65
158912--158990	35	2.4	31	78	15	95	31	0	20	48	1.50
158915--158985	35	2.0	35	94	0	124	32	0	21	46	1.51
160330--160429	43	2.3	44	79	8	107	33	11	10	46	1.73
161327--161386	7	8.7	7	77	3	59	45	41	0	13	1.43
163766--163815	24	2.1	24	96	0	91	16	14	26	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166001--167123	564	2.0	566	89	2	1738	32	19	16	32	1.94
176760--176805	24	1.9	23	86	8	65	54	6	4	34	1.46
177802--177859	28	2.0	28	83	9	73	13	15	0	70	1.17
180318--180461	3	50.7	3	70	21	73	69	2	3	25	1.15
180316--180462	13	11.2	13	71	20	69	70	2	3	24	1.14
180330--180467	20	7.2	19	70	17	72	71	2	4	22	1.15
180393--180458	17	4.0	16	80	18	73	75	0	4	19	0.97
180332--180467	38	3.5	38	73	12	107	70	2	4	22	1.16
180303--180458	34	4.5	35	76	11	106	69	2	3	24	1.18
180496--180539	20	2.2	20	91	0	70	25	25	40	9	1.84
180762--180793	14	2.4	14	90	10	50	46	0	40	12	1.42

Tables:   1

The End!