genome.fa.s9436.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009436.1 Kokia drynarioides strain JFW-HI SEQ_124143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156619

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3972--4255	142	2.0	142	100	0	568	23	28	11	36	1.89
4807--5027	37	5.9	37	76	3	192	37	29	16	15	1.90
4854--5023	75	2.3	75	83	1	207	37	31	15	15	1.89
10565--10641	24	3.2	24	81	0	91	12	33	18	35	1.89
13108--13178	33	2.2	33	85	7	92	28	15	1	54	1.49
13945--13986	22	2.0	22	90	4	68	59	0	14	26	1.35
23186--23371	58	3.2	58	81	7	216	32	3	26	37	1.73
23119--23341	85	2.6	83	79	8	223	36	3	24	35	1.73
23128--23451	29	11.1	29	72	9	196	35	3	24	37	1.72
23128--23451	87	3.7	88	75	11	229	35	3	24	37	1.72
25081--25119	19	2.1	18	85	4	51	12	17	48	20	1.80
25247--25284	7	5.6	7	96	3	69	13	0	28	57	1.36
26376--26435	19	3.2	19	76	19	63	36	1	1	60	1.17
26405--26477	19	3.8	18	72	19	58	43	2	0	53	1.15
26376--26449	37	2.0	37	81	5	87	40	2	1	55	1.22
34656--34684	15	1.9	15	100	0	58	58	0	0	41	0.98
40008--40047	21	1.9	21	84	0	53	42	5	17	35	1.71
41275--41346	17	4.2	18	75	10	55	34	4	5	55	1.42
43082--43499	30	14.3	30	75	13	257	35	23	4	35	1.76
43082--43500	29	14.4	30	77	12	304	35	23	4	36	1.76
43082--43501	59	7.2	57	76	12	247	35	23	4	35	1.76
43103--43587	29	16.6	30	76	14	259	35	23	6	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49933--50848	98	9.3	98	85	3	1155	37	18	25	18	1.93
49935--50845	49	18.5	49	68	12	476	37	18	25	18	1.93
51122--51388	39	6.8	39	73	12	217	23	32	20	23	1.98
51121--51388	78	3.4	78	84	1	358	23	32	20	23	1.98
51968--52062	17	5.5	17	74	3	84	34	4	6	54	1.45
52030--52071	17	2.4	17	88	4	57	47	0	2	50	1.14
53776--54012	29	8.1	30	81	11	226	36	26	2	34	1.70
53783--54071	59	4.9	58	81	9	268	35	25	3	34	1.74
53786--54064	57	4.8	57	81	6	228	36	25	3	34	1.75
53784--54074	29	10.0	29	79	8	220	36	25	3	34	1.74
53785--54105	89	3.7	86	77	11	242	37	25	4	32	1.76
56764--57123	180	2.0	180	97	0	675	31	21	13	32	1.92
62210--62254	23	1.9	24	86	4	65	55	4	2	37	1.32
62439--62502	27	2.4	27	86	2	94	21	14	7	56	1.63
62457--62510	27	2.0	27	85	0	72	22	11	7	59	1.56
62715--62761	22	2.1	22	100	0	94	23	21	12	42	1.87
64217--64367	77	2.0	77	85	5	207	33	8	6	51	1.58
64616--64644	9	3.3	9	95	4	51	93	0	6	0	0.36
64616--64647	16	2.0	16	93	0	55	90	0	9	0	0.45
68236--68265	14	2.1	15	93	6	53	33	33	20	13	1.91
68251--68349	28	3.5	28	82	5	128	28	32	19	20	1.97
68251--68375	28	4.5	28	79	3	117	32	32	16	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68338--68405	27	2.5	27	85	0	82	38	33	11	16	1.85
68706--68766	15	4.1	15	78	4	52	31	29	18	21	1.96
68713--68866	58	2.7	58	74	2	148	30	23	18	27	1.98
70625--70783	77	2.1	77	89	0	237	44	3	16	35	1.63
83514--83573	31	1.9	31	83	6	77	33	5	5	56	1.42
90334--90363	3	10.0	3	100	0	60	66	0	0	33	0.92
94233--94267	7	4.9	7	96	3	61	71	0	0	28	0.86
94274--94317	6	7.3	6	89	0	52	54	2	27	15	1.53
94274--94317	18	2.4	18	88	0	61	54	2	27	15	1.53
99804--99859	19	2.7	21	86	8	71	39	7	0	53	1.28
100932--101199	30	9.0	29	79	4	169	34	21	2	41	1.68
100932--101214	59	4.8	60	77	5	261	34	21	3	41	1.69
100979--101195	119	1.8	119	84	4	296	34	23	2	39	1.69
111197--111281	42	2.0	43	86	2	118	49	15	18	16	1.80
112271--112620	161	2.2	161	83	2	425	39	18	19	22	1.92
112511--112668	85	1.9	85	83	2	210	39	15	20	24	1.91
114592--114962	30	12.5	30	80	3	308	35	24	2	37	1.70
116180--116242	23	2.7	23	80	2	72	41	14	11	33	1.81
125766--126070	152	2.0	150	96	1	556	36	20	7	35	1.81
136617--136665	26	1.9	25	84	12	64	53	4	12	30	1.57
145376--145442	28	2.4	28	82	0	80	17	17	20	43	1.88
149156--149219	23	2.7	23	76	11	67	65	3	1	29	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156188--156214	11	2.5	11	100	0	54	25	0	0	74	0.83
156188--156221	16	2.1	17	88	5	52	26	0	2	70	1.01

Tables:   1

The End!