genome.fa.s9446.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009446.1 Kokia drynarioides strain JFW-HI SEQ_124153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182614

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628--692	30	2.2	30	91	0	103	56	13	3	26	1.52
1979--2066	44	2.0	44	100	0	176	36	15	22	25	1.94
2651--2880	30	7.7	30	79	8	202	36	5	20	37	1.75
2651--2926	89	3.1	88	79	5	286	35	5	21	37	1.77
2666--2966	30	10.1	30	78	7	179	36	4	20	38	1.74
2651--2878	119	1.9	119	81	3	280	36	5	20	38	1.75
4789--4982	79	2.5	78	82	5	230	28	16	21	33	1.95
4788--4982	39	4.9	39	73	9	148	28	16	22	33	1.95
5032--5242	50	4.2	50	81	3	219	20	24	18	36	1.94
16798--16950	30	5.2	29	77	10	141	33	7	21	36	1.83
16900--17023	29	4.2	29	78	6	124	37	4	17	39	1.71
16900--17023	30	4.2	29	80	5	115	37	4	17	39	1.71
17886--17930	18	2.5	18	77	0	54	22	6	8	62	1.48
18120--18172	24	2.3	22	84	12	70	9	3	37	49	1.53
18206--18236	16	1.9	16	93	0	53	16	0	6	77	0.97
18241--18284	19	2.4	17	82	14	52	77	2	0	20	0.88
18571--18602	13	2.5	13	95	5	57	53	6	0	40	1.26
19399--19432	18	1.9	18	88	5	52	29	0	5	64	1.17
20137--20185	22	2.1	23	88	7	73	73	4	8	14	1.21
20899--20939	16	2.5	17	88	7	59	34	0	2	63	1.08
21031--21062	15	2.1	16	94	5	57	62	0	0	37	0.95
21036--21071	15	2.3	15	90	4	54	63	2	0	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22080--22277	62	3.3	61	82	8	185	51	2	1	44	1.22
22151--22237	14	5.7	15	70	15	63	49	0	0	50	1.00
22166--22225	24	2.5	24	79	12	79	51	0	0	48	1.00
30516--30554	20	2.0	20	90	10	62	10	30	20	38	1.86
30479--30561	20	4.3	19	69	11	53	19	31	16	32	1.94
30526--30594	20	3.5	20	74	7	59	15	33	21	28	1.95
32068--32190	58	2.1	61	89	4	189	49	19	0	30	1.49
32254--32303	25	2.0	25	92	0	82	14	18	26	42	1.87
33305--33382	40	2.0	38	82	5	93	51	15	2	30	1.57
34593--34636	22	2.0	22	82	8	54	38	4	4	52	1.42
35317--35359	16	2.8	15	86	6	59	48	2	6	41	1.43
36966--37038	14	5.2	14	75	11	60	54	0	45	0	0.99
52122--52161	21	1.9	21	85	10	55	25	12	32	30	1.92
59503--59541	7	5.1	7	82	17	51	2	15	2	79	0.95
59512--59549	17	2.2	17	86	9	51	5	18	2	73	1.14
64619--64661	22	2.0	22	95	0	77	20	30	18	30	1.97
66905--66953	25	1.9	26	87	4	73	57	12	0	30	1.36
70880--70933	26	2.0	27	85	3	74	25	16	22	35	1.95
79468--79553	43	2.0	43	97	0	163	29	9	26	34	1.88
91310--91348	21	1.9	21	89	5	62	12	12	7	66	1.43
99115--99159	17	2.6	18	82	10	58	57	11	13	17	1.64
99548--99592	21	2.1	21	88	8	65	0	28	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111853--111901	25	1.9	26	87	4	73	57	14	0	28	1.38
112495--112567	22	3.3	22	75	5	76	23	12	21	42	1.87
113842--113875	17	2.0	17	100	0	68	35	23	29	11	1.90
115872--115896	13	1.9	13	100	0	50	0	16	4	80	0.87
116493--116540	17	2.8	17	81	6	51	58	10	12	18	1.62
116507--116540	18	1.9	18	88	5	52	55	5	14	23	1.61
117846--117882	18	2.1	18	94	0	65	35	0	37	27	1.57
123272--123301	15	2.1	15	93	6	53	20	33	6	40	1.78
135952--136012	32	1.9	32	83	6	79	34	27	11	26	1.91
140316--140394	25	3.1	25	81	1	95	29	22	18	29	1.98
144177--144253	36	2.2	36	85	2	102	37	25	9	27	1.86
171709--172110	198	2.0	198	98	0	768	34	22	15	26	1.95
174515--174566	7	7.3	7	87	8	61	28	25	1	44	1.65
180165--180243	40	2.0	40	84	2	104	43	17	21	17	1.89
180223--180374	41	3.7	41	88	2	218	31	23	29	15	1.95
180345--180427	30	2.8	30	98	0	157	31	25	26	16	1.97
180405--180577	41	4.2	40	80	3	184	33	19	25	21	1.97
180405--180555	82	1.8	82	84	2	205	32	19	27	20	1.97
180641--180721	27	3.0	28	72	18	89	60	6	0	33	1.22
180658--180699	20	2.0	20	90	4	66	66	2	0	30	1.04
180658--180699	21	2.0	22	86	13	63	66	2	0	30	1.04
180827--180888	26	2.4	26	97	0	115	11	17	6	64	1.46

Tables:   1

The End!