genome.fa.s9447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009447.1 Kokia drynarioides strain JFW-HI SEQ_124154, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150078

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259--689	59	7.4	59	77	10	241	34	4	29	32	1.77
271--690	29	14.3	29	79	9	381	34	4	29	32	1.76
296--696	89	4.6	85	74	11	319	33	3	30	32	1.76
1910--1951	18	2.3	19	80	16	52	35	0	0	64	0.94
2663--2721	28	2.1	28	87	0	82	44	3	1	50	1.28
2684--2724	6	7.2	6	78	10	50	53	0	0	46	1.00
2686--2720	11	3.2	11	87	0	52	51	0	0	48	1.00
2697--2733	18	2.1	18	95	5	67	56	0	0	43	0.99
2678--2746	28	2.5	28	80	4	77	53	4	1	40	1.30
3587--3614	5	5.6	5	100	0	56	21	21	39	17	1.93
3586--3621	15	2.4	14	86	13	54	22	19	36	22	1.95
11721--11755	2	17.5	2	100	0	70	51	0	0	48	1.00
15714--15761	24	1.9	26	84	16	66	31	22	0	45	1.53
20620--20688	34	2.0	35	94	2	122	37	15	11	34	1.84
24419--24482	29	2.3	27	83	5	74	62	0	9	28	1.26
31439--31470	7	4.2	8	88	11	50	0	9	0	90	0.45
31439--31470	15	2.2	14	94	5	55	0	9	0	90	0.45
33648--33673	2	13.0	2	100	0	52	50	0	50	0	1.00
41078--41117	6	6.7	6	100	0	80	52	15	32	0	1.43
44283--44357	24	3.1	24	88	0	96	24	12	9	54	1.66
44304--44369	24	2.8	24	85	0	69	27	10	10	51	1.69
45125--45160	18	1.9	19	88	5	56	30	16	5	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61217--61246	14	2.1	14	93	0	51	83	0	0	16	0.65
62666--62731	18	3.6	19	76	11	57	25	18	22	33	1.97
62756--62855	36	2.8	36	89	0	155	28	21	23	28	1.99
63149--63184	18	2.0	18	100	0	72	33	11	33	22	1.89
76112--76137	3	8.7	3	100	0	52	0	30	0	69	0.89
79767--79803	18	2.1	18	90	10	58	48	0	2	48	1.15
101402--101455	18	2.9	18	81	5	72	33	3	7	55	1.45
101441--101506	17	4.0	17	80	11	75	50	1	6	42	1.36
101534--101615	40	2.1	39	81	4	92	47	28	10	13	1.76
102177--102211	3	11.7	3	100	0	70	65	0	0	34	0.93
103270--103505	30	7.9	29	72	11	183	33	27	5	33	1.79
103258--103492	59	3.9	58	80	8	249	33	27	5	34	1.80
103598--103663	28	2.3	29	76	5	80	30	28	9	31	1.88
106550--106585	18	2.1	18	89	5	56	33	25	0	41	1.55
106972--107032	32	1.9	32	83	6	79	6	27	6	59	1.48
114094--114142	15	3.1	15	79	5	53	6	14	4	75	1.14
115149--115175	2	13.5	2	100	0	54	48	0	0	51	1.00
116406--116432	2	13.5	2	100	0	54	48	0	0	51	1.00
117433--117464	2	16.0	2	100	0	64	50	0	0	50	1.00
117609--117640	2	16.0	2	93	0	55	50	0	3	46	1.17
119303--119328	2	13.0	2	100	0	52	50	0	50	0	1.00
123194--123322	47	2.8	47	75	11	131	32	25	10	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123197--123300	46	2.2	47	83	5	122	32	28	10	27	1.90
133449--133627	91	2.0	89	93	3	306	38	10	17	32	1.85
135082--135119	20	1.9	20	88	0	58	36	2	7	52	1.45
143777--143836	23	2.7	22	70	14	52	51	5	1	41	1.33

Tables:   1

The End!