Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009448.1 Kokia drynarioides strain JFW-HI SEQ_124155, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 897

Length: 1496
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40


Found at i:1051 original size:21 final size:22

Alignment explanation


    Indices: 1025--1067  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1015 GCTTTGTTGT

                         *        
       1025 TGTTG-TTTGCTGTCATTTTGA
          1 TGTTGTTTTGCTGGCATTTTGA

                      *           
       1046 TGTTGTTTTGTTGGCATTTTGA
          1 TGTTGTTTTGCTGGCATTTTGA

       1068 CATTATAATA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21    5  0.26
  22   14  0.74

ACGTcount: A:0.09, C:0.07, G:0.26, T:0.58


Consensus pattern (22 bp):   
TGTTGTTTTGCTGGCATTTTGA

Done.