Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000945.1 Kokia drynarioides strain JFW-HI SEQ_112111, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12083
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33

Warning! 14 characters in sequence are not A, C, G, or T


Found at i:1933 original size:59 final size:59

Alignment explanation


    Indices: 1762--2379  Score: 736
    Period size: 59  Copynumber: 10.6  Consensus size: 59

       1752 GAGGTCCCTA

                                       *         *       *           *  
       1762 AACCTTCCAAAAATTACCATTTTACCCTCGAACTTTCAAAAAAT-TCATTTTTGACCCCG
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAAC-TTCCAAAAATCCCATTTTTGACCTCG

                                                                       
       1821 AACCTTCCAAAAATTACCATTTTA-CCCCGAACTTCCAAAAATCCCATTTTTGACCTCG
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCG

                                  *                                    *
       1879 AACCTTCCAAAAATTACCATTTCACCCCCGAACTTCCAAAAATCCCATTTTTGACC-CTA
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTC-G

                                                                    * *
       1938 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCT
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCG

                                  *                                  * 
       1997 AACCTTCCAAAAATTACCATTTCACCCCCGAACTTCCAAAAATCCCATTTTTGACCTTG
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCG

               *     *                  **              *       *      *
       2056 AACATTCCATAAATTACCATTTTACCCCTAAACTTCCAAAAATCACATTTTTAACC-CTT
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTC-G

                                  *         *                     *    
       2115 AACCTTCCAAAAATTACCATTTCACCCCCGAATTTCCAAAAATCCCATTTTTGATCTCG
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCG

              *                         **      **     *        *     *
       2174 AATCTTCCAAAAATTACCATTTTACCCCTTAACTTCTTAAAATTCCA-TTTTAACCTCA
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCG

              *       *                  *      *         *       *     *
       2232 AATCTTCCAAGAATTACCA-TTTA-CCCCAAACTTCTAAAAATCCCTTTTTTGGTCGCT-A
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTT-GAC-CTCG

                  *                      *                      *      
       2290 AACCTTTCAAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTAACCTCG
          1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCG

              *             *           *     
       2349 AAAC-TCTC-AAAATTTCCA-TTTACCCTCGAAC
          1 AACCTTC-CAAAAATTACCATTTTACCCCCGAAC

       2380 GTTTTAAATT


Statistics
Matches: 483,  Mismatches: 63, Indels: 28
        0.84            0.11        0.05

Matches are distributed among these distances:
  56   17  0.04
  57   28  0.06
  58  100  0.21
  59  311  0.64
  60   27  0.06

ACGTcount: A:0.34, C:0.32, G:0.04, T:0.31


Consensus pattern (59 bp):   
AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCG

Done.