Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009455.1 Kokia drynarioides strain JFW-HI SEQ_124162, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2006
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Found at i:1724 original size:22 final size:22

Alignment explanation


    Indices: 1699--1749  Score: 102
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       1689 TAAGTAAAGA

                                  
       1699 TTCCAAAAGGACCTAATCTGGC
          1 TTCCAAAAGGACCTAATCTGGC

                                  
       1721 TTCCAAAAGGACCTAATCTGGC
          1 TTCCAAAAGGACCTAATCTGGC

                   
       1743 TTCCAAA
          1 TTCCAAA

       1750 CTCATGAAAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   29  1.00

ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24


Consensus pattern (22 bp):   
TTCCAAAAGGACCTAATCTGGC
Done.