Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009460.1 Kokia drynarioides strain JFW-HI SEQ_124167, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1500
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33


Found at i:84 original size:16 final size:16

Alignment explanation


    Indices: 32--77  Score: 56
    Period size: 16  Copynumber: 2.9  Consensus size: 16

         22 ATATATATAT

                  *       * 
         32 AAGAAATAAAAGAATA
          1 AAGAAACAAAAGAAAA

                  *    *    
         48 AAGAAAGAAAAAAAAA
          1 AAGAAACAAAAGAAAA

                          
         64 AAGAAACAAAAGAA
          1 AAGAAACAAAAGAA

         78 GGAAGAACAG


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  16   25  1.00

ACGTcount: A:0.80, C:0.02, G:0.13, T:0.04


Consensus pattern (16 bp):   
AAGAAACAAAAGAAAA

Found at i:1104 original size:18 final size:18

Alignment explanation


    Indices: 1081--1115  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1071 GTAAACAATG

                              
       1081 TAAAAAAGAAAAATTGAA
          1 TAAAAAAGAAAAATTGAA

                  *          
       1099 TAAAAATGAAAAATTGA
          1 TAAAAAAGAAAAATTGA

       1116 GGCATATAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20


Consensus pattern (18 bp):   
TAAAAAAGAAAAATTGAA
Done.