genome.fa.s9461.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009461.1 Kokia drynarioides strain JFW-HI SEQ_124168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49734

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92--156	27	2.3	27	76	7	67	60	1	0	38	1.07
1051--1469	59	7.1	59	82	4	461	33	27	4	34	1.76
1051--1456	30	13.8	29	72	11	290	33	26	4	35	1.76
1051--1466	29	14.1	30	71	13	194	33	27	4	34	1.77
2551--2581	7	4.6	7	96	4	55	0	9	0	90	0.46
4763--4828	31	2.1	31	83	13	82	27	6	3	63	1.32
5107--5178	16	4.6	16	71	11	51	31	1	0	66	1.00
5107--5166	31	1.9	31	83	12	79	35	0	0	65	0.93
5577--5617	14	2.7	16	75	24	52	65	2	2	29	1.18
23676--23748	29	2.5	28	75	16	69	47	30	2	19	1.63
23800--23858	19	3.1	19	69	9	57	22	16	16	44	1.87
27888--28114	110	2.1	109	81	6	262	40	18	11	29	1.86
29270--29331	29	2.1	28	82	11	72	29	9	25	35	1.88
29289--29684	29	13.5	30	71	14	224	33	4	27	34	1.77
29289--29684	59	6.8	59	77	7	312	33	4	27	34	1.77
29318--29683	30	12.5	28	71	16	160	34	3	27	34	1.75
29634--29747	30	3.7	30	83	6	131	38	0	20	40	1.58
30848--30895	3	16.0	3	100	0	96	33	0	0	66	0.92
31629--31719	17	5.4	17	71	10	60	53	6	1	38	1.34
34084--34109	7	3.7	7	100	0	52	69	0	0	30	0.89
35036--35358	30	10.8	30	75	11	263	37	2	24	35	1.70
35036--35383	89	3.9	88	78	8	321	37	2	23	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35036--35307	59	4.6	58	75	9	174	37	2	25	35	1.68
35173--35380	30	7.0	29	76	13	117	39	2	22	36	1.67
37244--37408	85	1.9	85	92	0	276	25	20	13	40	1.90
37639--37818	48	4.0	48	74	15	175	23	22	16	37	1.94
37847--37939	48	1.9	48	86	0	132	24	21	13	39	1.90
37178--38391	208	5.9	208	87	3	1713	23	20	16	38	1.92
37856--38030	85	2.0	86	91	1	280	24	20	16	38	1.92
38112--38182	37	1.9	37	91	5	117	28	22	15	33	1.95
38065--38230	85	2.0	85	87	0	242	24	22	15	37	1.93
38330--38428	37	2.7	37	96	0	180	24	22	21	32	1.98
38122--38636	245	2.1	245	89	1	773	23	20	17	38	1.93
37914--38763	453	1.9	452	88	2	1276	23	20	17	39	1.92
38149--38593	123	3.6	122	75	8	409	22	20	17	39	1.92
38517--38678	85	1.9	85	84	2	218	24	20	12	42	1.87
41297--41650	30	11.8	30	76	8	269	39	1	20	38	1.60
41297--41653	59	6.0	58	76	10	301	39	1	21	37	1.61
42617--42646	3	9.7	3	92	7	51	30	0	0	70	0.88
43628--43844	75	3.0	73	83	6	287	54	3	14	27	1.55
43753--43792	15	2.6	16	88	7	57	57	0	5	37	1.21
48499--48532	17	1.9	18	88	5	52	41	0	23	35	1.55
48775--48808	18	1.9	18	88	5	52	38	0	11	50	1.39

Tables:   1

The End!