Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009471.1 Kokia drynarioides strain JFW-HI SEQ_124179, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6147
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:1820 original size:22 final size:22

Alignment explanation


    Indices: 1795--1836  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1785 ATATTTTAAA

                    * *           
       1795 TAAAAATATAGAAATAAAAACT
          1 TAAAAATAAAAAAATAAAAACT

                                
       1817 TAAAAATAAAAAAATAAAAA
          1 TAAAAATAAAAAAATAAAAA

       1837 ATGATTTTGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19


Consensus pattern (22 bp):   
TAAAAATAAAAAAATAAAAACT

Found at i:1834 original size:14 final size:14

Alignment explanation


    Indices: 1792--1836  Score: 54
    Period size: 14  Copynumber: 3.2  Consensus size: 14

       1782 TTTATATTTT

                     *   *
       1792 AAATAAAAATATAG
          1 AAATAAAAAAATAA

                     **   
       1806 AAATAAAAACTTAA
          1 AAATAAAAAAATAA

                          
       1820 AAATAAAAAAATAA
          1 AAATAAAAAAATAA

               
       1834 AAA
          1 AAA

       1837 ATGATTTTGA


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  14   26  1.00

ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18


Consensus pattern (14 bp):   
AAATAAAAAAATAA

Found at i:2280 original size:26 final size:26

Alignment explanation


    Indices: 2251--2303  Score: 81
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       2241 AAAGAAATTA

                                       
       2251 AAAATATGAAAAAAATA-TTTAAAAAT
          1 AAAATAT-AAAAAAATATTTTAAAAAT

                        *             
       2277 AAAATATAAAAATATATTTTAAAAAT
          1 AAAATATAAAAAAATATTTTAAAAAT

             
       2303 A
          1 A

       2304 TAAGAAACTC


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  25    8  0.32
  26   17  0.68

ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30


Consensus pattern (26 bp):   
AAAATATAAAAAAATATTTTAAAAAT
Done.