Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009475.1 Kokia drynarioides strain JFW-HI SEQ_124183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2840
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--39  Score: 78
    Period size: 2  Copynumber: 19.5  Consensus size: 2

                                                                      
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

         40 ATAGTTGAAA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:1553 original size:10 final size:11

Alignment explanation


    Indices: 1531--1591  Score: 52
    Period size: 11  Copynumber: 5.3  Consensus size: 11

       1521 TTTTAATGAT

                    *  
       1531 TTAAATTATTA
          1 TTAAATTAATA

                       
       1542 TT-AATTAATA
          1 TTAAATTAATA

                         
       1552 TTAGAATATAATA
          1 TTA-AAT-TAATA

                      *  
       1565 GTATAAATTATTA
          1 -T-TAAATTAATA

              *        
       1578 TTCAATTAATA
          1 TTAAATTAATA

               
       1589 TTA
          1 TTA

       1592 TCTTATTATA


Statistics
Matches: 40,  Mismatches: 5, Indels: 10
        0.73            0.09        0.18

Matches are distributed among these distances:
  10    9  0.22
  11   12  0.30
  12    4  0.10
  13    9  0.22
  14    4  0.10
  15    2  0.05

ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48


Consensus pattern (11 bp):   
TTAAATTAATA
Done.