genome.fa.s9478.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009478.1 Kokia drynarioides strain JFW-HI SEQ_124186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  181484

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3900--3985	36	2.4	35	82	7	102	40	24	10	24	1.86
3994--4182	72	2.6	72	83	0	234	35	21	15	26	1.93
3994--4182	36	5.2	36	78	2	200	35	21	15	26	1.93
10237--10335	51	1.9	51	97	0	189	32	20	22	25	1.98
14580--14667	43	2.1	43	97	2	169	59	6	12	21	1.57
14761--15134	29	12.8	29	77	6	317	35	4	24	35	1.75
14759--15134	59	6.4	58	76	8	262	35	4	24	35	1.75
14778--15124	88	4.0	88	84	5	402	35	4	24	35	1.75
14844--15124	59	4.8	58	84	3	321	35	4	24	34	1.78
15495--15584	36	2.5	36	87	0	126	26	18	20	34	1.96
23359--23561	36	5.6	36	86	1	219	36	21	14	27	1.92
25071--25103	12	2.8	12	95	0	57	60	3	9	27	1.42
25157--25186	3	10.0	3	100	0	60	66	0	0	33	0.92
25199--25248	26	2.0	26	92	4	84	46	0	16	38	1.47
37937--38250	158	2.0	158	88	2	470	23	22	23	31	1.99
39687--39716	16	1.9	15	93	6	51	50	0	0	50	1.00
46077--46123	23	2.1	22	84	11	60	29	0	2	68	1.02
52298--52328	13	2.4	13	94	0	53	38	0	3	58	1.15
52726--52788	23	2.9	21	72	9	63	53	9	1	34	1.43
53382--53441	28	2.1	29	81	9	70	30	13	3	53	1.56
53788--53850	33	2.0	32	82	11	78	47	7	14	30	1.72
55685--55847	79	2.1	78	90	2	263	33	14	11	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59226--59567	170	2.0	170	89	1	524	35	14	17	33	1.90
66149--66201	21	2.5	21	90	0	79	18	39	20	20	1.92
73055--73094	17	2.4	17	91	0	62	47	25	12	15	1.80
76493--76748	75	3.4	74	81	2	314	19	19	22	38	1.93
85811--85853	17	2.5	17	92	7	70	48	6	11	32	1.66
87135--87219	25	3.4	25	76	0	71	37	20	17	24	1.93
87965--87994	3	10.0	3	100	0	60	66	0	33	0	0.92
92006--92049	7	6.4	7	84	5	63	47	27	11	13	1.77
92000--92055	20	2.8	20	86	2	67	48	23	12	16	1.80
92011--92055	14	3.3	14	79	14	58	46	26	11	15	1.79
92010--92064	21	2.7	21	85	2	67	43	25	14	16	1.86
99144--99198	22	2.5	22	71	11	58	29	23	25	21	1.99
101232--101270	18	2.2	18	86	4	53	43	2	0	53	1.14
101336--101414	12	6.9	12	72	17	53	7	0	21	70	1.11
101282--101351	20	3.5	20	84	3	106	5	5	17	71	1.25
101334--101381	23	2.0	23	84	4	60	4	0	25	70	1.04
101354--101395	21	2.0	21	90	0	66	9	0	19	71	1.13
101354--101415	21	3.0	19	83	9	61	9	0	19	70	1.14
101387--101428	21	2.0	21	86	4	59	14	0	19	66	1.25
101573--101616	21	2.1	21	83	8	54	22	0	13	63	1.29
112728--112775	23	2.1	23	100	0	96	31	16	4	47	1.65
115672--115747	21	3.3	22	72	22	57	46	0	3	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115687--115738	26	2.0	26	92	7	88	46	0	3	50	1.20
115715--115757	21	2.0	21	86	0	59	37	2	6	53	1.41
116474--116508	17	2.1	17	89	5	54	31	0	14	54	1.40
121451--121507	27	2.1	27	83	0	69	40	10	3	45	1.56
126179--126229	20	2.5	21	79	17	54	52	0	5	41	1.25
138093--138124	7	4.6	7	100	0	64	40	43	0	15	1.47
152827--152867	21	2.0	21	100	0	82	53	4	7	34	1.50
163844--163986	29	4.9	29	68	14	80	32	4	27	34	1.76
163844--164053	59	3.6	56	80	12	196	32	3	24	38	1.74
163893--164093	30	6.8	29	77	11	187	35	2	22	39	1.68
163893--164093	59	3.4	58	84	6	219	35	2	22	39	1.68
164656--164719	6	11.0	6	78	6	60	54	3	1	40	1.25
164656--164747	17	5.4	17	78	1	94	55	3	2	39	1.28
164659--164721	23	2.7	23	80	4	74	57	3	1	38	1.24
165306--168610	208	15.9	207	82	3	3563	23	21	18	36	1.95
165306--168610	624	5.3	622	86	2	4113	23	21	18	36	1.95
168442--168770	159	2.1	160	88	1	491	24	19	19	36	1.95
168595--173849	208	25.3	207	81	3	4993	22	21	18	37	1.94
170461--170532	37	1.9	37	97	0	135	23	25	18	33	1.97
170461--170559	37	2.7	38	84	12	127	24	24	18	33	1.97
171912--172010	37	2.7	36	92	3	153	22	25	18	34	1.96
173362--173460	37	2.7	36	87	3	135	24	24	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173857--174008	78	2.0	77	81	3	180	24	21	31	23	1.98
175357--175472	35	3.3	33	75	17	92	3	19	0	75	0.99
175369--175474	11	9.8	10	72	13	61	3	17	0	77	0.97
175360--175459	22	4.2	23	70	21	73	2	21	1	76	0.95
175354--175457	12	8.4	13	76	18	53	1	22	0	75	0.97
175349--175458	13	8.0	13	70	23	66	1	22	0	74	0.97
180705--180847	29	4.9	30	81	6	152	31	5	27	35	1.80
180738--180927	29	6.5	28	79	12	127	33	4	25	37	1.75
180776--180939	29	5.7	29	81	11	158	32	4	26	36	1.76

Tables:   1

The End!