genome.fa.s9481.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009481.1 Kokia drynarioides strain JFW-HI SEQ_124190, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47827

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5221--5255	17	2.1	18	89	10	56	60	5	0	34	1.21
8786--8848	31	2.0	31	84	6	83	36	9	12	41	1.76
9316--9353	20	1.9	20	94	0	67	47	23	5	23	1.72
10911--10950	21	1.9	21	85	10	55	45	15	0	40	1.46
18243--18272	12	2.6	11	90	10	51	73	13	0	13	1.10
18403--18583	23	7.9	22	71	17	95	66	19	4	8	1.36
18404--18493	21	4.1	21	76	14	74	68	20	4	6	1.29
18418--18487	12	5.9	12	74	3	70	72	18	2	5	1.17
18432--18539	12	9.0	12	70	11	51	66	21	5	6	1.35
18423--18583	23	6.8	24	77	9	127	67	19	4	8	1.33
19317--19356	21	1.9	21	84	0	53	52	10	12	25	1.70
20299--20325	2	13.5	2	100	0	54	51	0	0	48	1.00
23160--23218	24	2.4	24	79	17	68	66	0	1	32	1.02
23163--23201	20	2.0	20	85	10	53	64	0	2	33	1.08
23517--23542	10	2.6	10	100	0	52	80	0	11	7	0.89
24190--24410	30	7.5	29	76	8	119	35	23	3	38	1.71
24186--24322	60	2.3	60	80	9	140	35	20	3	40	1.70
24272--24416	59	2.5	58	78	4	148	33	26	2	37	1.71
31715--31751	15	2.3	17	86	9	51	81	5	2	10	0.96
32578--33216	99	6.5	99	81	1	672	34	17	29	18	1.94
32578--33217	199	3.2	197	82	1	726	34	17	29	18	1.94
32532--33217	50	13.9	49	74	6	506	34	17	29	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33752--33784	17	1.9	17	93	0	57	42	3	0	54	1.15
34418--34476	13	5.1	12	73	19	54	62	0	1	35	1.05
35219--35764	276	2.0	276	98	0	1065	25	20	13	40	1.89
35729--35910	30	6.2	30	81	7	158	31	23	3	41	1.72
35745--35902	59	2.7	60	82	4	196	32	22	3	41	1.72
36490--36539	24	2.1	24	100	0	100	38	12	16	34	1.85
42315--42383	29	2.4	28	83	4	84	13	20	18	47	1.81
42632--42656	12	2.1	12	100	0	50	0	0	24	76	0.80
45009--45158	23	6.5	22	80	13	124	11	24	21	43	1.85
45009--45205	69	2.8	67	82	11	204	12	23	20	43	1.86
45009--45156	46	3.2	46	83	9	176	11	24	21	42	1.86
45805--45847	11	3.8	11	84	3	59	58	0	0	41	0.98
45799--45847	23	2.1	23	85	7	64	57	0	0	42	0.99
46906--46984	40	2.0	40	92	0	131	46	1	0	51	1.08
47647--47684	17	2.2	17	86	9	51	18	5	5	71	1.25
47763--47826	17	3.8	16	80	12	65	43	0	3	53	1.16

Tables:   1

The End!