genome.fa.s9487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009487.1 Kokia drynarioides strain JFW-HI SEQ_124196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117535

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1484--1508	13	1.9	13	100	0	50	24	8	24	44	1.80
1934--2542	205	3.0	205	89	1	893	22	24	19	34	1.96
3507--3594	45	1.9	46	86	9	126	11	26	15	46	1.80
14518--14808	29	9.9	29	77	11	231	31	3	29	36	1.73
16395--16419	13	1.9	13	100	0	50	24	8	24	44	1.80
16436--16503	17	4.1	16	88	5	91	52	2	0	44	1.16
16423--16480	10	5.8	10	72	22	50	51	1	1	44	1.21
16429--16485	23	2.5	23	85	5	71	54	1	0	43	1.10
16430--16504	6	13.0	6	75	18	70	52	2	0	45	1.15
21121--21399	29	9.5	28	71	14	154	31	5	27	36	1.78
21108--21309	58	3.5	57	82	8	221	32	5	27	34	1.80
21268--21404	60	2.3	58	82	8	170	30	2	29	37	1.72
22082--22604	199	2.6	201	83	4	683	23	22	18	35	1.96
22726--22907	39	4.7	39	71	2	150	25	18	30	25	1.98
22726--22907	78	2.3	78	85	1	240	25	18	30	25	1.98
22962--23156	101	1.9	101	88	0	291	30	16	15	37	1.90
23264--23739	50	9.5	50	72	7	252	14	25	18	40	1.90
23295--23745	150	3.0	149	90	1	686	14	25	19	40	1.90
23552--23740	101	1.9	101	81	7	231	14	27	18	39	1.89
24794--24829	3	11.7	3	88	5	54	0	27	0	72	0.85
24790--24836	9	5.2	9	82	12	53	0	25	0	74	0.82
30532--30964	29	14.8	30	66	18	112	34	6	25	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30657--30956	58	5.2	59	82	7	330	33	4	26	36	1.76
30659--30964	87	3.5	88	74	10	288	32	4	26	36	1.78
32791--32857	17	3.9	16	74	12	62	55	5	2	35	1.40
32796--32863	35	2.0	35	88	2	93	55	8	2	32	1.45
35187--35249	17	3.7	17	77	8	56	53	3	6	36	1.42
36142--36199	31	2.0	28	83	10	71	62	6	12	18	1.52
36529--36563	18	1.9	18	94	0	61	34	25	31	8	1.86
36544--36594	21	2.3	23	86	6	70	43	17	31	7	1.78
38784--38846	30	2.3	28	81	13	69	41	1	12	44	1.52
40946--41012	17	3.9	16	74	12	62	55	5	2	35	1.40
40951--41018	35	2.0	35	88	2	93	55	8	2	32	1.45
43342--43404	17	3.7	17	77	8	56	53	3	6	36	1.42
44297--44354	31	2.0	28	83	10	71	62	6	12	18	1.52
44684--44718	18	1.9	18	94	0	61	34	25	31	8	1.86
44699--44749	21	2.3	23	86	6	70	43	17	31	7	1.78
46939--47001	30	2.3	28	81	13	69	41	1	12	44	1.52
48582--48649	23	2.9	23	80	2	82	33	13	11	41	1.81
55907--55946	5	7.4	5	86	13	53	80	2	0	17	0.83
55910--56002	6	15.3	6	75	13	66	74	4	4	17	1.15
58891--58925	3	11.7	3	93	0	61	65	31	2	0	1.07
60943--60988	22	2.0	22	84	12	58	39	21	4	34	1.73
69470--69511	7	5.7	7	79	20	50	66	0	2	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69467--69511	14	3.0	15	90	6	65	66	0	2	31	1.04
78657--78761	23	4.6	23	80	0	111	36	4	11	47	1.61
78657--78761	46	2.3	46	84	0	138	36	4	11	47	1.61
83829--83904	38	2.0	40	86	5	111	28	21	14	35	1.92
83839--83911	19	3.8	19	87	0	92	26	24	16	32	1.96
94102--94215	51	2.2	51	92	1	192	35	17	25	21	1.95
94195--94583	79	4.9	79	90	3	581	31	26	18	23	1.97
95112--95292	63	2.8	63	89	4	274	44	0	4	51	1.21
100903--100946	18	2.5	17	82	13	54	68	0	2	29	1.02
101598--101647	21	2.5	20	77	6	57	52	2	2	44	1.24
101685--101741	29	2.0	30	86	13	84	52	12	7	28	1.64
104982--105033	18	2.9	18	72	11	52	46	0	0	53	1.00
104964--105050	45	1.9	45	86	9	124	48	1	0	50	1.08
116473--116509	16	2.2	17	95	4	67	21	10	5	62	1.48

Tables:   1

The End!