genome.fa.s9491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009491.1 Kokia drynarioides strain JFW-HI SEQ_124200, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129132

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1869--1914	19	2.2	21	81	11	60	56	4	0	39	1.19
15345--15386	20	2.0	21	86	4	59	26	2	4	66	1.23
17859--17892	18	1.9	18	88	5	52	47	2	0	50	1.16
19466--19538	37	2.0	37	86	0	101	50	1	9	38	1.44
24078--24231	73	2.1	74	95	2	276	40	23	18	18	1.91
26028--26070	21	2.0	21	100	0	86	41	18	4	34	1.71
31719--31799	35	2.3	35	81	12	96	49	27	4	18	1.68
33218--33277	32	1.9	32	86	3	86	41	10	8	40	1.69
33563--33616	16	3.3	16	71	5	54	59	1	22	16	1.47
38129--38205	21	3.7	21	67	19	61	33	15	24	25	1.95
41007--41058	23	2.2	24	83	13	63	55	3	1	38	1.29
41938--41996	24	2.5	23	81	10	66	47	1	1	49	1.21
47598--47633	18	2.0	18	100	0	72	33	11	27	27	1.91
64203--64287	20	4.2	20	75	11	68	68	0	5	25	1.12
66601--66634	17	2.1	17	88	5	52	50	2	0	47	1.16
69241--69273	17	1.9	17	93	0	57	24	27	0	48	1.51
74557--74598	17	2.4	17	88	4	57	21	28	2	47	1.63
74537--74584	24	2.0	24	84	8	62	18	33	2	45	1.61
75005--75107	9	10.6	9	67	17	55	62	2	4	30	1.31
75048--75113	18	3.8	16	76	23	62	63	1	6	28	1.27
75048--75128	18	4.4	17	73	21	58	62	2	4	29	1.29
78350--78498	30	5.0	30	88	1	219	38	20	2	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89631--89667	18	2.1	18	94	0	65	18	10	10	59	1.59
90102--90670	49	11.5	51	71	13	406	37	18	26	16	1.92
90095--90641	99	5.5	98	89	1	765	37	19	26	16	1.93
91795--91838	16	2.7	16	80	16	54	25	2	9	63	1.35
93011--93188	30	6.0	30	89	0	268	39	17	2	41	1.62
93222--93304	43	1.9	44	82	2	105	27	15	6	50	1.67
95332--95389	30	1.9	30	85	0	80	36	8	1	53	1.42
95376--95613	30	8.1	29	80	9	241	35	21	2	40	1.65
95376--95613	87	2.7	88	86	4	320	35	21	2	40	1.65
97827--97873	11	4.5	11	76	17	55	40	0	0	59	0.97
97838--97892	20	2.8	20	83	8	60	38	1	3	56	1.28
97826--98019	59	3.2	57	74	17	133	39	2	5	53	1.35
101783--101820	13	3.1	13	81	11	53	57	2	7	31	1.41
101990--102040	20	2.5	20	83	0	66	45	9	5	39	1.62
102404--102463	29	2.0	30	87	3	86	50	13	6	30	1.67
108329--108362	13	2.6	14	81	18	54	5	0	73	20	1.04
111424--111461	17	2.2	17	90	0	58	71	0	18	10	1.14
116040--116094	25	2.0	27	83	16	69	63	3	1	30	1.22
119457--120075	82	7.5	82	84	3	764	28	13	10	47	1.76
119457--120061	247	2.5	246	86	3	817	28	13	10	47	1.75
120513--120548	17	2.1	17	90	10	56	69	5	0	25	1.10
120503--120548	16	2.8	16	81	15	58	69	4	0	26	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121240--121291	20	2.6	20	87	6	61	23	5	0	71	1.07

Tables:   1

The End!