Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009493.1 Kokia drynarioides strain JFW-HI SEQ_124202, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2260
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31


Found at i:669 original size:269 final size:269

Alignment explanation


    Indices: 190--729  Score: 999
    Period size: 269  Copynumber: 2.0  Consensus size: 269

        180 TTTGCATATA

                                                                             
        190 AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCGAGTA
          1 AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCGAGTA

                                                      *                      
        255 ATTTAATGAGTAGGTTTTGGTTACGAAATTGGATCAACTTATTATTTTTGATAGAGTAAGAGGAC
         66 ATTTAATGAGTAGGTTTTGGTTACGAAATTGGATCAACTTATCATTTTTGATAGAGTAAGAGGAC

                                                              *              
        320 TAAATTTAAATACATTAAAATAGACGGATTAATTTATTAATTTCTGTAAAGCTGAGGGATGAAAA
        131 TAAATTTAAATACATTAAAATAGACGGATTAATTTATTAATTTCTGTAAACCTGAGGGATGAAAA

               *                    *                                        
        385 TCATGATTAGACCATTAAGAAAAGGAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA
        196 TCAAGATTAGACCATTAAGAAAAGAAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA

                     
        450 AGAAGCAGC
        261 AGAAGCAGC

                                                                        *    
        459 AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCTAGTA
          1 AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCGAGTA

                    *                                         *              
        524 ATTTAATGGGTAGGTTTTGGTTACGAAATTGGATCAACTTATCATTTTTGGTAGAGTAAGAGGAC
         66 ATTTAATGAGTAGGTTTTGGTTACGAAATTGGATCAACTTATCATTTTTGATAGAGTAAGAGGAC

                        *                                                    
        589 TAAATTTAAATATATTAAAATAGACGGATTAATTTATTAATTTCTGTAAACCTGAGGGATGAAAA
        131 TAAATTTAAATACATTAAAATAGACGGATTAATTTATTAATTTCTGTAAACCTGAGGGATGAAAA

             *                                                               
        654 TGAAGATTAGACCATTAAGAAAAGAAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA
        196 TCAAGATTAGACCATTAAGAAAAGAAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA

                     
        719 AGAAGCAGC
        261 AGAAGCAGC

              
        728 AA
          1 AA

        730 AGGTCTTTCT


Statistics
Matches: 262,  Mismatches: 9, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 269  262  1.00

ACGTcount: A:0.41, C:0.06, G:0.19, T:0.34


Consensus pattern (269 bp):   
AATTGATGAATAATTATTTTTTCTGTTTATATATAAATTATGAATTATTGTTTTTTAAGCGAGTA
ATTTAATGAGTAGGTTTTGGTTACGAAATTGGATCAACTTATCATTTTTGATAGAGTAAGAGGAC
TAAATTTAAATACATTAAAATAGACGGATTAATTTATTAATTTCTGTAAACCTGAGGGATGAAAA
TCAAGATTAGACCATTAAGAAAAGAAAAGAGGAGGGAAAAAGAAAGCAAGATAATTCTTGGAAAA
AGAAGCAGC
Done.