Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009497.1 Kokia drynarioides strain JFW-HI SEQ_124208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1964
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33


Found at i:601 original size:18 final size:18

Alignment explanation


    Indices: 578--614  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        568 CAGTATGACT

                         *    
        578 TTCTCCATTCGCATTACC
          1 TTCTCCATTCGCACTACC

                     *        
        596 TTCTCCATTTGCACTACC
          1 TTCTCCATTCGCACTACC

             
        614 T
          1 T

        615 GCACCAATGA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.16, C:0.38, G:0.05, T:0.41


Consensus pattern (18 bp):   
TTCTCCATTCGCACTACC

Found at i:872 original size:31 final size:31

Alignment explanation


    Indices: 834--894  Score: 95
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        824 AAAATGTCGT

                                           
        834 AATGACTTAAATAAAAACTTCCAAATAGTTC
          1 AATGACTTAAATAAAAACTTCCAAATAGTTC

                        *       * *       
        865 AATGACTTAAATGAAAACTTTCTAATAGTT
          1 AATGACTTAAATAAAAACTTCCAAATAGTT

        895 TAGACCATTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  31   27  1.00

ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33


Consensus pattern (31 bp):   
AATGACTTAAATAAAAACTTCCAAATAGTTC
Done.