genome.fa.s9499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009499.1 Kokia drynarioides strain JFW-HI SEQ_124210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158095

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18739--18837	27	3.6	27	74	8	76	37	1	4	57	1.24
22643--22700	22	2.6	22	86	0	71	41	13	25	18	1.88
25469--25516	16	3.1	16	72	6	53	20	2	33	43	1.64
25526--25564	21	1.9	20	84	5	51	25	5	12	56	1.57
25756--25929	40	4.3	40	81	5	183	26	19	20	33	1.97
28027--28060	17	2.0	17	100	0	68	29	5	23	41	1.78
29826--29944	60	2.0	60	84	0	157	39	1	12	46	1.52
36053--36117	23	2.9	23	86	9	89	67	3	3	26	1.20
36052--36115	22	2.9	22	79	9	67	67	3	3	26	1.21
36171--36213	11	3.8	11	85	14	61	72	0	2	25	0.97
38504--38639	55	2.4	58	82	12	158	38	13	25	22	1.91
39579--39711	58	2.2	58	77	13	137	33	11	13	42	1.80
40337--40437	10	11.4	9	66	18	52	69	3	2	23	1.19
40379--40474	35	2.7	36	80	8	97	67	3	2	27	1.16
40338--40610	9	29.6	9	66	19	68	61	3	3	31	1.29
40564--40600	20	1.9	20	88	5	58	56	0	2	40	1.13
40453--40610	69	2.3	69	81	7	182	56	2	3	36	1.31
40823--40889	31	2.2	31	84	12	86	41	20	16	20	1.90
41976--42031	20	2.8	20	73	13	53	32	1	5	60	1.29
42023--42088	20	3.2	20	80	6	71	37	3	0	59	1.13
42019--42065	11	4.4	11	82	15	62	38	2	0	59	1.09
41987--42114	9	13.9	9	67	21	70	35	2	1	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41986--42080	49	1.9	49	82	4	120	36	2	2	58	1.21
47499--47831	165	2.0	165	95	0	594	33	15	25	25	1.96
52487--52538	17	3.1	17	72	5	52	17	3	9	69	1.31
54761--54795	7	5.3	7	90	10	56	71	0	0	28	0.86
54761--54795	13	2.6	14	86	13	56	71	0	0	28	0.86
58427--58460	17	1.9	17	88	5	50	14	5	35	44	1.70
61059--61121	25	2.5	26	70	15	60	41	0	1	57	1.08
63856--63937	25	3.2	25	78	16	89	53	4	1	40	1.30
63884--63946	19	3.4	18	72	16	58	55	3	0	41	1.16
67868--67949	41	2.0	41	95	0	146	13	18	29	39	1.89
67870--67959	41	2.2	41	90	4	137	14	18	28	37	1.91
67870--68026	41	3.9	41	77	7	124	15	19	29	35	1.93
69816--69877	20	3.0	22	84	11	71	43	24	17	14	1.86
80020--80071	26	2.0	26	100	0	104	30	26	15	26	1.96
81846--81916	37	2.0	35	86	10	99	56	2	1	39	1.23
96212--96258	22	2.1	22	100	0	94	17	23	31	27	1.96
103606--103636	14	2.2	14	94	0	53	67	0	3	29	1.06
117592--118017	43	10.0	43	87	1	559	19	15	24	40	1.91
124662--124720	26	2.3	26	84	0	82	28	20	16	33	1.95
130628--130867	24	10.0	24	79	7	220	29	23	15	31	1.95
130628--130867	72	3.3	72	81	8	274	29	23	15	31	1.95
130624--130866	48	5.1	48	80	5	258	28	23	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131727--131765	21	1.9	20	84	5	51	43	25	0	30	1.55
135926--135973	26	1.9	25	84	16	64	4	20	6	68	1.28
139563--139614	15	3.5	15	78	0	59	23	28	23	25	1.99
142420--142465	20	2.3	21	85	7	60	65	4	2	28	1.23
142520--142607	42	2.1	42	100	0	176	14	11	32	40	1.82
143066--143099	16	2.1	16	100	0	68	55	0	0	44	0.99
144817--144859	20	2.1	21	86	4	61	13	4	37	44	1.65
144800--144852	27	1.9	28	84	3	72	18	3	35	41	1.69
144821--144865	20	2.3	19	81	11	54	11	4	40	44	1.60
145486--145596	30	4.0	29	71	17	83	30	11	9	47	1.72
150758--150788	16	1.9	16	93	0	53	54	3	6	35	1.42
151643--151682	21	1.9	21	84	0	53	25	10	20	45	1.81
152636--152664	14	2.1	14	93	6	51	75	17	0	6	1.01
156012--156053	21	2.0	22	86	13	61	9	21	4	64	1.42
157853--157896	23	2.0	23	86	4	63	40	18	22	18	1.91

Tables:   1

The End!