genome.fa.s9502.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009502.1 Kokia drynarioides strain JFW-HI SEQ_124213, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124508

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3648--3692	19	2.5	19	86	13	60	8	6	2	82	0.93
9998--10048	24	2.1	24	92	0	84	27	19	23	29	1.98
12872--13060	91	2.1	91	92	0	315	19	3	23	53	1.59
12963--13275	117	2.7	117	94	0	554	18	4	23	53	1.63
13408--13456	24	2.1	23	88	11	73	57	4	22	16	1.56
13412--13472	24	2.5	25	81	7	72	57	6	21	14	1.60
16785--16854	31	2.3	31	97	0	131	42	15	22	18	1.88
22413--22612	50	4.1	50	83	5	237	35	18	25	21	1.95
29424--29599	74	2.4	74	82	3	210	34	17	26	21	1.95
29374--29551	98	1.8	98	87	2	268	33	16	27	22	1.96
29509--29656	50	3.0	50	90	3	219	37	17	27	17	1.93
29387--29648	24	10.7	24	72	12	185	34	17	28	19	1.95
36498--36783	50	5.7	50	84	0	338	34	16	24	24	1.95
36661--36751	24	3.7	24	74	11	94	35	18	28	17	1.94
36497--36783	150	1.9	150	84	0	385	35	16	24	24	1.95
38375--38415	21	2.0	21	90	0	64	26	26	19	26	1.99
45963--46001	13	2.9	14	80	7	53	5	28	0	66	1.12
45981--46037	31	1.9	28	86	10	78	3	28	1	66	1.18
46012--46060	20	2.4	20	82	3	62	6	22	0	71	1.08
49844--50169	59	5.5	59	78	8	313	38	13	17	30	1.88
55214--55287	24	3.1	24	84	3	105	28	10	6	54	1.61
61727--61781	20	2.7	21	75	16	53	47	0	12	40	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64392--64437	16	2.9	16	90	0	74	41	6	19	32	1.77
64605--64780	60	3.0	60	79	13	195	53	2	0	43	1.17
64670--64749	29	2.9	27	73	14	81	50	3	0	46	1.19
72475--72524	20	2.4	21	81	15	52	48	0	8	44	1.32
79007--79032	12	2.2	12	100	0	52	15	7	23	53	1.67
84068--84141	30	2.4	31	90	4	114	54	9	8	28	1.61
91369--91447	29	2.7	29	82	7	79	36	5	8	49	1.56
91551--91622	31	2.2	32	80	7	83	43	9	9	37	1.71
92230--92282	24	2.2	24	82	0	61	35	5	13	45	1.67
96555--96607	22	2.5	21	75	22	56	5	5	18	69	1.28
96573--96638	31	2.1	32	91	5	109	4	6	16	72	1.21
96602--96650	21	2.3	22	85	3	73	4	6	20	69	1.27
96559--96661	52	1.9	55	88	5	158	5	6	19	67	1.34
96626--96718	32	2.9	30	80	12	87	8	4	17	69	1.30
96669--96747	12	6.9	12	68	18	53	10	3	16	69	1.31
98303--98368	17	3.9	17	82	7	80	39	4	0	56	1.20
99000--99046	23	2.1	22	92	4	76	61	0	2	36	1.08
100093--100339	30	8.4	29	80	5	237	36	23	2	36	1.70
100118--100339	59	3.8	60	82	8	267	37	24	1	36	1.66
100146--100339	89	2.2	90	84	6	261	37	24	1	37	1.65
100093--100341	29	8.4	30	82	4	211	36	24	2	36	1.70
100345--100455	29	3.8	29	91	2	145	30	25	6	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105191--105237	17	2.8	17	80	0	58	51	10	17	21	1.75
110338--110367	15	1.9	16	93	6	53	56	6	16	20	1.62
111863--111887	2	12.5	2	100	0	50	48	0	0	52	1.00
112551--112628	18	4.2	18	71	9	59	38	5	2	53	1.37
116994--117041	18	2.7	18	80	0	69	35	20	20	22	1.96
122063--122234	68	2.5	68	85	0	227	36	18	12	32	1.88
123455--123626	68	2.5	68	84	2	211	36	18	14	30	1.91

Tables:   1

The End!