Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009504.1 Kokia drynarioides strain JFW-HI SEQ_124215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2046
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37


Found at i:1012 original size:41 final size:41

Alignment explanation


    Indices: 899--1100  Score: 230
    Period size: 41  Copynumber: 4.9  Consensus size: 41

        889 ATACTTGGTG

                                      * *    *          *
        899 TATAAA-AAGGAAGACTCATGTCTCGGGTTGAGCATGAGAAATTG
          1 TATAAATAAGGAAGACTCATGTCTCGAGATGAGAATGAG--A--C

                                  *                  
        943 TATAAAT--GGAAGACTCATGTGTCGAGATGAGAATGAGAC
          1 TATAAATAAGGAAGACTCATGTCTCGAGATGAGAATGAGAC

                                     *               
        982 TATAAATAAGGAAGACTCATGTCTCTAGATGAGAATGAGAC
          1 TATAAATAAGGAAGACTCATGTCTCGAGATGAGAATGAGAC

               *                    *  *            *
       1023 TATGAATAAGGAAGACTCATGTCTTGAAATGAGAATGAGAT
          1 TATAAATAAGGAAGACTCATGTCTCGAGATGAGAATGAGAC

             * * *                               
       1064 TTTGATTAAGGAAGACTCATGTCTCGAGATGAGAATG
          1 TATAAATAAGGAAGACTCATGTCTCGAGATGAGAATG

       1101 GGAATATGGT


Statistics
Matches: 139,  Mismatches: 16, Indels: 9
        0.85            0.10        0.05

Matches are distributed among these distances:
  39    7  0.05
  41  100  0.72
  43   26  0.19
  44    6  0.04

ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26


Consensus pattern (41 bp):   
TATAAATAAGGAAGACTCATGTCTCGAGATGAGAATGAGAC

Done.