genome.fa.s9509.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009509.1 Kokia drynarioides strain JFW-HI SEQ_124220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198024

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35142--35200	21	2.6	23	76	17	61	66	1	1	30	1.12
36259--36605	131	2.6	130	84	2	426	33	14	12	40	1.83
36711--36953	131	1.9	131	84	1	335	34	15	11	38	1.84
42633--42703	36	2.0	36	88	5	108	54	0	4	40	1.20
53461--53503	20	2.2	19	87	8	59	13	25	0	60	1.34
54484--54793	29	10.6	29	73	13	169	36	22	2	38	1.68
54486--54786	58	5.2	59	78	8	242	36	22	2	37	1.69
54484--54785	87	3.5	85	80	7	286	36	22	2	38	1.69
54574--54834	117	2.2	117	81	8	300	35	24	4	36	1.75
54834--54916	29	2.8	31	72	15	77	30	26	3	39	1.73
54633--54879	58	4.2	59	73	10	163	33	23	5	36	1.79
57606--57748	56	2.5	58	82	3	173	43	2	3	51	1.30
61841--62030	96	2.0	95	83	1	236	42	18	5	33	1.73
62105--62151	21	2.3	21	85	7	62	55	0	2	42	1.12
62115--62153	20	2.0	20	85	10	53	61	0	0	38	0.96
62440--62571	10	13.6	10	68	13	71	29	3	2	65	1.20
62487--62547	28	2.2	28	88	5	88	29	3	0	67	1.07
62425--62561	19	7.3	18	71	13	71	29	3	2	63	1.26
62629--62837	91	2.3	94	79	9	252	31	7	20	41	1.80
62675--62849	91	1.9	91	89	4	273	34	7	20	38	1.80
62883--62951	34	2.0	34	100	0	138	39	26	8	26	1.85
63332--63629	56	5.2	56	79	6	287	32	13	7	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63332--63637	114	2.7	112	84	3	371	31	12	8	47	1.71
63424--63678	115	2.2	114	84	4	282	33	14	6	45	1.70
63672--63731	26	2.3	25	85	5	75	65	3	0	31	1.09
63832--64122	57	5.3	57	74	9	167	46	7	14	31	1.71
63879--64224	57	6.2	56	74	8	217	46	8	14	30	1.75
63925--64189	108	2.4	106	80	7	282	47	8	15	29	1.74
67548--67584	2	18.5	2	100	0	74	0	48	0	51	1.00
74515--74593	42	1.9	40	82	5	95	46	2	3	46	1.34
77491--77561	22	3.2	22	68	7	72	32	5	1	60	1.29
77478--77570	44	2.3	38	78	19	123	32	4	1	62	1.22
81331--81396	31	2.1	31	83	5	80	30	13	9	46	1.74
84340--84410	18	4.1	18	71	8	58	36	4	2	56	1.34
84340--84404	34	1.9	34	90	0	103	36	4	3	55	1.36
85889--85951	24	2.6	24	100	0	126	30	12	3	53	1.54
85911--85962	24	2.2	24	82	0	59	40	9	1	48	1.47
90213--90275	32	2.0	32	84	6	83	49	11	4	34	1.59
93555--93599	22	2.0	23	86	4	65	26	15	20	37	1.92
115542--116340	306	2.7	300	80	9	775	39	11	8	41	1.71
124576--124634	29	2.0	29	96	0	109	33	5	3	57	1.37
132534--132573	18	2.2	18	86	8	55	65	10	7	17	1.46
134617--134688	12	6.2	12	70	15	53	36	20	12	30	1.90
134647--134711	23	2.8	24	85	2	87	43	20	12	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139338--139492	59	2.7	57	83	4	141	47	1	1	50	1.17
139354--139492	59	2.4	57	87	3	188	46	0	1	52	1.09
139639--139678	16	2.5	16	83	0	53	35	22	0	42	1.54
150098--150123	13	2.0	13	100	0	52	30	0	0	69	0.89
151164--151220	23	2.5	24	85	5	73	68	21	5	5	1.29
151182--151245	22	2.8	23	80	4	67	68	18	6	6	1.32
151147--151252	22	4.8	21	69	17	54	67	21	5	4	1.30
153553--153888	167	2.0	171	81	11	406	40	0	34	24	1.60
153884--153909	7	3.7	7	100	0	52	0	0	53	46	1.00
155978--156022	23	1.9	24	86	13	67	35	4	6	53	1.47
157084--157116	11	3.1	11	82	8	50	24	0	0	75	0.80
157084--157131	20	2.3	20	89	3	69	25	0	2	72	0.95
157086--157124	14	2.6	15	88	8	53	20	0	2	76	0.90
157121--157152	14	2.4	13	90	10	55	25	3	0	71	1.00
165028--165072	6	7.5	6	84	0	54	48	0	28	22	1.50
170693--170746	6	9.3	6	83	4	67	20	1	0	77	0.86
170693--170747	22	2.4	21	88	11	74	21	1	0	76	0.88
170693--170746	18	3.1	17	86	10	74	20	1	0	77	0.86
171700--171799	6	15.7	6	73	21	71	79	1	13	7	0.99
171731--171798	19	3.5	20	84	11	81	80	0	11	7	0.89
171731--171791	20	3.2	20	86	13	92	81	0	11	6	0.85
172810--172855	25	1.9	25	86	8	69	34	4	6	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174860--174907	24	1.9	25	87	8	71	60	2	0	37	1.09
187274--187305	13	2.3	15	89	10	50	68	6	3	21	1.26
192930--192971	15	2.8	15	78	10	50	45	4	0	50	1.23
196013--196044	2	16.0	2	100	0	64	0	50	0	50	1.00
197811--197896	18	4.8	18	80	8	95	45	2	1	51	1.21
197843--197928	6	14.5	6	71	19	65	45	2	2	50	1.27
197810--197926	53	2.2	53	84	4	146	43	2	2	51	1.29
197810--197926	35	3.3	35	86	4	137	43	2	2	51	1.29
197810--197927	18	6.6	17	75	10	94	44	2	2	50	1.29

Tables:   1

The End!