Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009510.1 Kokia drynarioides strain JFW-HI SEQ_124221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5230
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38


Found at i:4803 original size:14 final size:13

Alignment explanation


    Indices: 4772--4806  Score: 52
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       4762 AGAATGATAG

                  *      
       4772 ATTAAAGTAAAAA
          1 ATTAAAATAAAAA

                         
       4785 ATTAAAATAAAAA
          1 ATTAAAATAAAAA

               *     
       4798 ATTTAAATA
          1 ATTAAAATA

       4807 TATTTGTATT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29


Consensus pattern (13 bp):   
ATTAAAATAAAAA
Done.