genome.fa.s9513.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009513.1 Kokia drynarioides strain JFW-HI SEQ_124224, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227652

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--138	30	4.6	29	83	8	170	36	4	18	40	1.71
1--138	60	2.3	59	87	5	188	36	4	18	40	1.71
1075--1145	34	2.1	34	100	0	142	26	8	42	22	1.82
1720--2005	79	3.6	78	86	2	367	26	16	24	32	1.96
1720--2006	39	7.3	39	72	8	204	26	16	24	32	1.96
2064--2191	50	2.6	50	86	2	168	21	26	17	34	1.96
2403--2442	6	6.2	6	83	16	53	20	0	0	80	0.72
2409--2446	14	2.4	17	79	20	55	21	0	0	78	0.74
2453--2483	3	10.3	3	100	0	62	67	0	0	32	0.91
6882--6907	2	13.0	2	100	0	52	50	0	0	50	1.00
7765--7821	17	3.4	17	90	0	87	42	1	1	54	1.21
8548--8594	22	2.1	22	100	0	94	34	17	23	25	1.96
9764--9982	116	1.9	115	79	10	250	34	29	5	31	1.80
9734--9968	29	8.1	27	68	16	100	35	28	5	30	1.81
9574--10037	30	15.8	28	70	12	242	35	25	5	32	1.80
9704--10036	57	5.8	55	76	12	201	35	27	5	32	1.80
10130--10161	14	2.3	14	100	0	64	12	0	6	81	0.87
11887--11919	17	1.9	17	93	0	57	45	12	0	42	1.41
14039--14083	22	2.1	21	84	12	56	40	0	6	53	1.27
15710--15779	24	3.1	22	75	16	81	38	5	1	54	1.33
16104--16163	26	2.4	25	75	10	59	56	6	3	33	1.42
29489--29528	14	2.8	14	84	3	53	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37534--37595	28	2.1	30	82	11	76	45	0	19	35	1.51
37587--37682	28	3.3	29	83	12	117	35	1	29	34	1.65
37553--37702	30	5.1	29	77	10	128	36	1	26	36	1.65
37657--37832	30	5.9	29	75	9	140	36	2	26	34	1.69
37687--37840	59	2.6	59	88	6	222	35	1	25	36	1.68
37649--37820	89	1.9	90	82	5	215	36	1	27	34	1.67
38383--38625	99	2.5	98	82	6	303	19	30	17	32	1.95
38173--38627	148	3.1	147	77	6	427	19	30	17	32	1.95
38179--38627	49	9.1	49	73	7	257	19	30	17	32	1.95
39522--39601	16	5.2	14	80	19	81	1	18	1	78	0.88
39522--39636	7	15.1	7	73	18	72	4	17	0	77	0.98
39520--39585	29	2.2	30	86	7	91	1	18	1	78	0.90
39590--39636	20	2.5	18	83	10	58	8	14	0	76	1.01
47890--48055	90	1.9	89	85	3	235	37	2	26	33	1.70
47836--48054	30	7.3	30	72	11	135	37	2	25	34	1.69
48275--48447	89	1.9	89	98	0	337	25	22	24	27	2.00
53595--53818	71	3.2	69	81	6	243	27	26	13	31	1.94
55090--55129	21	2.0	21	85	14	57	35	27	0	37	1.57
60492--60529	15	2.5	15	83	16	51	63	2	0	34	1.09
85444--85498	24	2.2	25	87	6	76	10	18	3	67	1.35
85561--85716	77	2.0	78	87	3	217	46	9	8	35	1.68
86044--86079	18	1.9	19	88	5	56	8	22	5	63	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86144--86288	76	1.9	76	92	2	247	48	5	7	37	1.55
86627--86678	20	2.5	21	84	9	63	9	15	9	65	1.47
86627--86674	19	2.6	18	83	9	60	10	14	10	64	1.49
91035--91079	23	2.0	23	90	0	72	64	0	0	35	0.94
95747--95790	23	1.9	23	86	9	63	45	9	11	34	1.72
95786--95848	30	2.2	27	86	8	81	53	12	6	26	1.62
101983--102007	13	1.9	13	100	0	50	48	0	0	52	1.00
102029--102138	54	2.0	54	82	3	130	38	17	12	31	1.87
102081--102257	54	3.3	53	75	6	135	38	21	7	32	1.81
103030--103090	12	5.1	12	71	15	54	9	0	18	72	1.11
103010--103090	24	3.4	24	75	8	76	9	1	19	69	1.24
103221--103259	9	4.3	9	84	9	53	23	0	7	69	1.14
106396--106447	22	2.4	22	90	0	86	15	48	15	21	1.81
107561--107659	49	2.0	49	100	0	198	38	2	18	41	1.62
111134--111328	108	1.8	108	82	4	250	33	23	18	23	1.97
113834--113890	28	2.0	29	83	13	73	43	1	8	45	1.45
118919--118949	16	1.9	16	93	0	53	51	12	3	32	1.56
120379--120413	7	5.0	7	90	10	54	17	0	0	82	0.66
134768--134843	26	2.9	26	82	0	71	30	14	13	42	1.84
135451--135485	16	2.2	16	100	0	70	48	28	5	17	1.69
139777--139834	25	2.3	25	94	5	100	27	18	18	34	1.95
139790--139876	25	3.5	25	77	4	86	22	17	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143168--143216	2	24.5	2	100	0	98	51	48	0	0	1.00
143801--143868	17	3.9	17	78	1	73	47	14	19	19	1.83
164281--164306	10	2.6	10	100	0	52	7	53	0	38	1.30
164828--164852	13	1.9	13	100	0	50	48	12	16	24	1.79
175952--176022	25	2.8	25	85	8	92	23	14	22	39	1.91
179890--179955	25	2.6	25	90	2	96	30	24	18	27	1.98
184403--184441	19	2.1	19	100	0	78	15	35	5	43	1.69
184537--184645	57	1.9	57	96	0	200	24	30	11	33	1.91
186910--186988	26	3.1	26	81	3	90	31	22	20	25	1.98
186921--187001	26	3.2	25	86	6	101	29	24	20	24	1.99
189453--189486	17	2.0	17	94	0	59	32	17	2	47	1.63
205876--205972	33	2.9	34	81	6	117	20	34	2	43	1.64
207076--207136	29	2.1	29	85	11	81	40	13	3	42	1.60
207916--207958	18	2.4	18	80	7	52	51	0	2	46	1.13
215047--215193	46	3.2	46	87	5	201	40	6	4	48	1.51
221778--221854	34	2.3	34	83	0	100	41	1	5	51	1.32
221778--221854	17	4.5	17	80	6	84	41	1	5	51	1.32
222524--222560	19	2.0	19	94	5	67	51	0	0	48	1.00
223682--224021	59	5.8	59	85	2	434	33	32	3	30	1.76
223682--224021	117	2.9	117	85	4	443	33	32	3	30	1.76
224008--224146	59	2.4	59	83	2	181	34	33	4	27	1.77

Tables:   1

The End!